Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
chromatin state
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
snATAC-seq
Available data
38
bed bed3+
6
bed bed9
3
bigWig
2
bigBed bed9
1
tsv
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
16
monocyte
16
retina
14
endothelial cell
14
fibroblast
13
excitatory neuron
13
pigmented layer of retina
12
hepatocyte
11
kidney
11
macrophage
10
pericyte cell
9
pancreatic beta cell
8
astrocyte
8
pancreatic alpha cell
7
pancreatic acinar cell
7
pancreatic ductal cell
7
smooth muscle cell
6
B cell
6
endothelial cell of hepatic sinusoid
6
heart left ventricle
6
islet of Langerhans
6
pancreatic delta cell
5
T cell
5
embryonic stem cell
5
erythroblast
5
heart
5
inhibitory neuron
5
skeletal muscle satellite cell
4
CD8-positive, alpha-beta T cell
4
coronary artery
4
memory B cell
4
pancreas
4
pancreatic stellate cell
4
retinal pigment epithelial cell
4
type II pneumocyte
3
cardiac fibroblast
3
brain
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
enterocyte
3
heart right ventricle
3
liver
3
muscle of leg
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
osteoblast
3
pancreatic polypeptide-secreting cell
3
regulatory T cell
3
skeletal muscle fiber
3
tibial artery
3
tibial nerve
3
type I pneumocyte
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SGBS preadipocytes
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipocyte
2
angular gyrus
2
aorta
2
aortic endothelial cell
2
ascending aorta
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
gamma-delta T cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
2
hepatic stellate cell
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesenchymal stem cell
2
mesothelial cell
2
oligodendrocyte precursor cell
2
omental fat pad
2
plasma cell
2
plasmacytoid dendritic cell
2
right atrium auricular region
2
right cardiac atrium
2
schwann cell
2
smooth muscle cell of the esophagus
2
subcutaneous adipose tissue
2
temporal lobe
2
thoracic aorta
2
type I muscle cell
2
type II muscle cell
1
hindlimb muscle
1
Ammon's horn
1
CD4-positive, alpha-beta T cell
1
EndoC_BH1
1
HepG2
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipose tissue
1
alveolar macrophage
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac endothelial cell
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
extravillous trophoblast
1
fetal heart
1
fetal thymocyte
1
forelimb muscle
1
foveolar cell of stomach
1
frontal cortex
1
gastric goblet cell
1
germinal matrix
1
glial cell
1
globus pallidus
1
glomerular endothelial cell
1
goblet cell
1
granular cell of epidermis
1
hepatoblast
1
hippocampal neuron
1
immature natural killer cell
1
intestinal tuft cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
leukocyte
1
lower motor neuron
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
medulla oblongata
1
melanocyte
1
metanephros
1
microglial cell
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
myeloid dendritic cell
1
myoepithelial cell
1
myofibroblast cell
1
naive regulatory T cell
1
naive t cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuroendocrine cell
Organ
3
blood vessel
3
epithelium
3
vasculature
3
vein
2
connective tissue
Life stage
1
newborn
Date released
2
January, 2020
1
May, 2020
1
November, 2021
1
October, 2019
Software used
2
chromhmm
2
macs
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR603NLX
released
Annotation file set
: Accessible chromatin of endothelial cell of umbilical vein ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR214PMG
released
Annotation file set
: ChromHMM 18-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR772SPX
released
Annotation file set
: ChromHMM 15-state model for endothelial cell of umbilical vein from ENCODE ChIP-seq data. ROADMAP HUVEC Umbilical Vein Endothelial Primary Cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP