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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
Available data
13
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
4
hg19
GRCh38
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
15
retina
13
pigmented layer of retina
5
pancreatic alpha cell
5
pancreatic beta cell
5
pancreatic delta cell
3
B cell
3
CD8-positive, alpha-beta T cell
3
endothelial cell
3
memory B cell
3
monocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
pancreatic polypeptide-secreting cell
3
regulatory T cell
2
SGBS preadipocytes
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
aortic endothelial cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
extracellular matrix secreting cell
2
gamma-delta T cell
2
macrophage
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
retinal pigment epithelial cell
1
T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
adipose tissue
1
basal cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
glomerular visceral epithelial cell
1
immature natural killer cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukocyte
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte
1
mesenchymal stem cell
1
myeloid dendritic cell
1
myofibroblast cell
1
naive regulatory T cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuroendocrine cell
1
non-classical monocyte
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
plasma cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
smooth muscle cell
1
stellate neuron
1
type I muscle cell
1
type I pneumocyte
1
type II muscle cell
1
type II pneumocyte
Organ
2
epithelium
2
eye
Date released
2
November, 2022
Software used
2
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
assembly!
GRCh38
Showing 2 of 2 results
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Download
FileSet
DSR246ESC
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of retinal pigment epithelial cell using nonviral (EP1) with cigarette smoke extract (CSE) treatment
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR287DMU
released
Annotation file set
: Accessible chromation annotation of ATAC-seq of retinal pigment epithelial cell using viral (IMR90.4) with cigarette smoke extract (CSE) treatment
Lab:
AMP-T2D consortium
Project:
AMP