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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
5
snATAC-seq
Available data
8
bed bed3+
5
bigWig
5
tsv
3
bigBed narrowPeak
1
bam
1
bed gappedPeak
1
xls
File set status
5
released
Genome assembly (visualization)
6
hg19
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
15
retina
13
pigmented layer of retina
5
pancreatic alpha cell
5
pancreatic beta cell
5
pancreatic delta cell
3
B cell
3
CD8-positive, alpha-beta T cell
3
endothelial cell
3
memory B cell
3
monocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
pancreatic polypeptide-secreting cell
3
regulatory T cell
2
SGBS preadipocytes
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
aortic endothelial cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
extracellular matrix secreting cell
2
gamma-delta T cell
2
macrophage
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
retinal pigment epithelial cell
1
T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipose tissue
1
basal cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
glomerular visceral epithelial cell
1
immature natural killer cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukocyte
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte
1
mesenchymal stem cell
1
myeloid dendritic cell
1
myofibroblast cell
1
naive regulatory T cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuroendocrine cell
1
non-classical monocyte
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
plasma cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
smooth muscle cell
1
stellate neuron
1
type I muscle cell
1
type I pneumocyte
1
type II muscle cell
1
type II pneumocyte
Organ
5
epithelium
5
pancreas
Life stage
3
adult
Date released
2
February, 2024
2
January, 2021
1
September, 2022
Software used
3
macs
1
cicero
1
deltasvm
Lab
5
Kyle Gaulton, UCSD
Project
3
AMP
2
T1D
RFA
3
AMP
2
T1D
assembly!
GRCh38
month_released!
October, 2019
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR821QOK
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSTlow_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR247PPG
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of SSThigh_delta
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR236XNZ
released
Annotation file set
: pancreatic delta cell co-accessibility linking chromatin sites to gene promoters annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR964IEU
released
Annotation file set
: Genetic variants with deltaSVM predictions in pancreatic delta cell snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR119NFC
released
Annotation file set
: pancreatic delta cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP