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Schema
Citing CMDGA
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Annotation type
1
representative DNase hypersensitivity sites
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
DNase-seq
Available data
1
bed bed3+
1
tsv
File set status
1
released
Organism
1
Homo sapiens
Biosample type
1
in vitro differentiated cells
Biosample term
5
subcutaneous adipose tissue
4
Ammon's horn
4
C1 segment of cervical spinal cord
4
amygdala
4
anterior cingulate cortex
4
ascending aorta
4
body of pancreas
4
caudate nucleus
4
cerebellum
4
cerebellum (Hemisphere)
4
coronary artery
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
frontal cortex
4
gastrocnemius medialis(Muscle - Skeletal)
4
hypothalamus
4
left ventricle myocardium
4
nucleus accumbens
4
omental fat pad
4
putamen
4
right atrium auricular region
4
right lobe of liver
4
substantia nigra
4
tibial artery
4
tibial nerve
3
pancreatic MUC5B+ductal cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic alpha+beta cell
3
pancreatic beta cell
3
pancreatic cycling alpha cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
pancreatic endothelial cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
pancreatic stellate cell
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
B Cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
T Cell
2
Transitional Principal-Intercalated Cell
2
Vascular Smooth Muscle Cell / Pericyte
2
islet of Langerhans
1
EndoC_BH1
1
aorta wall
1
liver
1
myocyte
1
retina
1
skeletal muscle
1
visceral abdominal adipose tissue
Date released
1
February, 2021
Software used
1
altius-index
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
annotation_type!
gene expression
Showing 1 of 1 results
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Download
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP