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Schema
Citing CMDGA
Clear Filters
Annotation type
3
eQTL
2
caQTL
2
pQTL
1
accessible chromatin
Annotation Category
7
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
3
ATAC-seq
3
RNA-seq
2
quantitative proteomics
Available data
4
bed bed3+
File set status
8
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
5
tissue
3
primary cell
Biosample term
4
cartilage tissue
3
CD4-positive helper T cell
1
synovial joint
Organ
4
connective tissue
Life stage
5
adult
Date released
5
August, 2021
2
October, 2022
1
February, 2024
Software used
5
fastqtl
5
peer
2
matrix-eQTL
1
bedops
1
pepatac
Lab
6797
AMP-T2D consortium
393
Bing Ren, UCSD
281
KPMP
144
Kyle Gaulton, UCSD
139
Jesse Engreitz, Stanford University
65
Stephen Parker, UMich
53
Katalin Susztak, Upenn
24
Ines Cebola, Imperial College London
19
Xin Sun, UCSD
9
Anna Gloyn, Oxford
8
Struan F.A. Grant, CHOP
5
ITG
5
Patrick T. Ellinor, Broad
4
Karen Mohlke, UNC
3
Stephen S. Rich Lab @UVA
Project
5
ITG
3
T1D
RFA
5
ITG
3
T1D
Showing 8 of 8 results
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FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR474VCE
released
Annotation file set
: eQTL of synovial tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR376WYD
released
Annotation file set
: eQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR276XRX
released
Annotation file set
: eQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR077VUE
released
Annotation file set
: full cis-caQTL stats for 10 T1D-associated regions
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR578KNM
released
Annotation file set
: nominally significant results from cis-caQTL scan
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D