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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
chromatin state
2
candidate regulatory elements
Annotation Category
8
cis-regulatory elements
4
Target gene links
2
Genetic variant effects
1
Gene expression levels
Annotation type Category
5
ChIP-seq
3
DNase-seq
2
snATAC-seq
Available data
5
bed bed3+
3
bed bed9
1
bigBed bed9
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
3
primary cell
Biosample term
102
monocyte
45
heart
41
stomach
40
kidney
38
A549
36
CD8-positive, alpha-beta T cell
36
brain
33
muscle of arm
32
lung
32
neural progenitor cell
31
small intestine
30
muscle of leg
29
adrenal gland
29
placenta
29
retina
27
large intestine
26
common myeloid progenitor, CD34-positive
26
left lung
26
muscle of back
24
B cell
23
right lung
23
thymus
21
hematopoietic multipotent progenitor cell
21
right kidney
20
liver
20
pigmented layer of retina
20
renal pelvis
19
renal cortex interstitium
18
CD4-positive, alpha-beta memory T cell
18
left kidney
17
fibroblast
17
spinal cord
16
endothelial cell
16
heart left ventricle
15
K562
15
hepatocyte
14
CD8-positive, alpha-beta memory T cell
14
T cell
14
adipocyte
14
adipose tissue
14
spleen
13
excitatory neuron
12
MCF-7
12
endothelial cell of hepatic sinusoid
12
macrophage
12
mononuclear cell
12
retinal pigment epithelial cell
11
embryonic stem cell
11
islet of Langerhans
11
pericyte cell
11
regulatory T cell
11
sigmoid colon
11
smooth muscle cell
11
trophoblast cell
10
HepG2
10
astrocyte
10
endothelial cell of umbilical vein
10
fibroblast of cardiac tissue
10
pancreas
10
tibial nerve
9
T-helper 1 cell
9
caudate nucleus
9
erythroblast
9
fibroblast of lung
9
foreskin keratinocyte
9
gastrocnemius medialis
9
heart right ventricle
9
natural killer cell
9
ovary
9
psoas muscle
9
thyroid gland
9
transverse colon
8
CD14-positive monocyte
8
EndoC_BH1
8
T-helper 17 cell
8
T-helper 2 cell
8
body of pancreas
8
chorionic villus
8
coronary artery
8
endocrine pancreas
8
left cardiac atrium
8
mammary gland epithelial cell
8
mesenchymal stem cell
8
muscle of trunk
8
pancreatic beta cell
8
pancreatic ductal cell
8
skeletal muscle myoblast
8
skeletal muscle satellite cell
8
tibial artery
7
HeLa-S3
7
Peyer's patch
7
chorion membrane
7
fibroblast of dermis
7
foreskin fibroblast
7
keratinocyte
7
layer of hippocampus
7
mature neutrophil
7
osteoblast
7
pancreatic acinar cell
7
pancreatic alpha cell
7
right atrium auricular region
7
skin fibroblast
7
temporal lobe
7
testis
7
upper lobe of left lung
6
SGBS preadipocytes
6
angular gyrus
6
aorta
6
ascending aorta
6
endometrium adenocarcinoma
6
frontal cortex
6
glutamatergic neuron
6
immortal human breast epithelial cell line cell
6
kidney tubule cell
6
naive T cell
6
neurosphere
6
omental fat pad
6
skeletal muscle tissue
6
thoracic aorta
5
CD14-positive, CD16-negative classical monocyte
5
GM12878
5
H1-hESC
5
NAMALWA cell
5
SK-N-DZ
5
SK-N-SH
5
breast epithelium
5
bronchial epithelial cell
5
cardiac muscle cell
5
cerebellum
5
chondrocyte
5
choroid plexus epithelial cell
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
duodenal mucosa
5
epithelial cell of prostate
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
eye
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
inhibitory neuron
5
left renal cortex interstitium
5
left renal pelvis
5
limb
5
mucosa of rectum
5
pancreatic delta cell
5
prostate gland
5
right renal cortex interstitium
5
right renal pelvis
5
skeletal muscle fiber
5
stomach smooth muscle
5
substantia nigra
5
tongue
5
trophoblast
5
urinary bladder
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
Ammon's horn
4
BE(2)-C
4
BJ cell
4
Brodmann (1909) area 46
4
CD4-positive, alpha-beta T cell
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM19240
4
HEK293
4
HL-60
4
IMR-90
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NT2-D1 cell
4
SK-N-MC
4
T47D
4
WERI-Rb-1
4
alternatively activated macrophage
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
epithelial cell of proximal tubule
4
esophagus
4
fibroblast of breast
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
globus pallidus
4
glomerular endothelial cell
4
kidney glomerular epithelial cell
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
medulla oblongata
4
memory B cell
4
midbrain
4
muscle cell
Organ
8
connective tissue
Life stage
3
adult
2
embryonic
1
unknown
Date released
February, 2021
4
September, 2022
1
February, 2024
1
June, 2020
1
May, 2022
1
October, 2019
Software used
3
chromhmm
3
macs
2
r
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
month_released!
April, 2020
February, 2021
Showing 8 of 8 results
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Download
FileSet
DSR902OPF
released
Annotation file set
: Candidate regulatory elements for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP