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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
31
CD8-positive, alpha-beta T cell
30
endothelial cell
28
monocyte
27
fibroblast
24
macrophage
23
CD4-positive, alpha-beta memory T cell
21
pericyte cell
20
endothelial cell of umbilical vein
19
CD14-positive monocyte
19
foreskin keratinocyte
19
smooth muscle cell
18
trophoblast cell
17
T-helper 17 cell
17
astrocyte
17
keratinocyte
17
pancreatic ductal cell
16
B cell
16
foreskin fibroblast
16
regulatory T cell
15
hepatocyte
15
osteoblast
14
common myeloid progenitor, CD34-positive
14
pancreatic acinar cell
13
neurosphere
13
pancreatic beta cell
12
bronchial epithelial cell
12
excitatory neuron
12
pancreatic alpha cell
12
pancreatic delta cell
11
T cell
11
T-helper 1 cell
11
erythroblast
11
fibroblast of lung
11
mammary epithelial cell
11
skeletal muscle myoblast
10
T-helper 2 cell
10
neutrophil
10
retinal pigment epithelial cell
9
epithelial cell of prostate
9
fibroblast of cardiac tissue
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
skeletal muscle fiber
9
skin fibroblast
8
fibroblast of dermis
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glomerular endothelial cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
epithelial cell of proximal tubule
7
kidney epithelial cell
7
mammary gland epithelial cell
7
pancreatic stellate cell
7
pulmonary artery endothelial cell
7
renal cortical epithelial cell
7
skeletal muscle satellite cell
7
type I muscle cell
7
type II muscle cell
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
glomerular visceral epithelial cell
6
naive B cell
6
natural killer cell
6
olfactory receptor cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
6
type II pneumocyte
5
CD4-positive helper T cell
5
T follicular helper cell
5
brain microvascular endothelial cell
5
central memory CD8-positive, alpha-beta T cell
5
dermis blood vessel endothelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of peridontal ligament
5
fibroblast of the aortic adventitia
5
inhibitory neuron
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
lung microvascular endothelial cell
5
mast cell
5
mesenchymal stem cell
5
mononuclear cell
5
non-pigmented ciliary epithelial cell
5
plasma cell
5
tracheal epithelial cell
4
T-cell
4
activated CD4-positive, alpha-beta T cell
4
acute myeloid leukemia cell
4
adipocyte
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
basal cell
4
blood vessel smooth muscle cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of the conjunctiva
4
gabaergic neuron
4
gamma-delta T cell
4
glutamatergic neuron
4
leukocyte
4
luminal epithelial cell of mammary gland
4
mature natural killer cell
4
mature neutrophil
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesangial cell
4
mesothelial cell
4
myofibroblast cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
renal epithelial cell
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
3
cardiac fibroblast
3
CD14-positive, CD16-negative classical monocyte
3
Ishikawa
3
S-shaped body
3
Th1 cell
3
Th17 cell
3
activated CD8-positive, alpha-beta T cell
3
alternatively activated macrophage
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
cardiac fibroblast
3
endocardial cell
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
glial cell
3
goblet cell
3
hepatic stellate cell
3
kidney interstitial cell
3
meso-epithelial cell
3
microglial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive B cel
3
naive T cell
3
naive regulatory T cell
3
naive t cell
3
neoplastic cell
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic polypeptide-secreting cell
3
pancreatic quiescent stellate cell
3
parietal cell
3
peptic cell
3
peripheral blood stem cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
schwann cell
3
thyroid follicular cell
3
type B pancreatic cell
3
type I pneumocyte
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
Th2 cell
2
alveolar macrophage
2
basal cell of epidermis
2
cardiac endothelial cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
ciliated cell
2
club cell
2
colon goblet cell
Organ
5
connective tissue
Life stage
adult
4
unknown
Date released
3
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
April, 2020
relevant_life_stage!
adult
Showing 5 of 5 results
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Download
FileSet
DSR197PKJ
released
Annotation file set
: Candidate regulatory elements for BSS00344 fibroblast of peridontal ligament from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR299QOE
released
Annotation file set
: Target gene predictions for BSS00344 fibroblast of peridontal ligament from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR210JRU
released
Annotation file set
: Chromatin states for BSS00344 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR534TSK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of peridontal ligament
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR585DKC
released
Annotation file set
: Accessible chromatin annotation for Others HPdLF from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP