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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
candidate regulatory elements
1
chromatin state
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ChIP-seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
5
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
in vitro differentiated cells
6
primary cell
1
stem cell
Biosample term
131
monocyte
59
HeLa-S3
53
heart
52
H1-hESC
52
kidney
46
stomach
44
brain
43
CD8-positive, alpha-beta T cell
43
islet of Langerhans
41
A549
40
endothelial cell
35
lung
34
adrenal gland
34
liver
34
muscle of arm
34
placenta
34
retina
34
small intestine
33
K562
32
hepatocyte
32
macrophage
31
muscle of leg
30
fibroblast
29
large intestine
28
thymus
26
B cell
26
common myeloid progenitor, CD34-positive
26
left lung
25
muscle of back
24
adipose tissue
23
CD14-positive monocyte
23
EndoC_BH1
23
heart left ventricle
23
regulatory T cell
23
right lung
22
pancreatic ductal cell
22
right kidney
21
epithelial cell of proximal tubule
21
pericyte cell
21
renal pelvis
21
spinal cord
20
breast cancer cell
20
pigmented layer of retina
20
renal cortex interstitium
20
smooth muscle cell
19
glomerular endothelial cell
19
spleen
19
tibial nerve
18
CD4-positive, alpha-beta memory T cell
18
HFFc6
18
T cell
18
left kidney
18
pancreatic beta cell
18
subcutaneous adipose tissue
17
MCF-7
17
T-helper 1 cell
17
coronary artery
17
pancreatic acinar cell
17
pancreatic alpha cell
16
caudate nucleus
16
endothelial cell of hepatic sinusoid
16
keratinocyte
15
T-helper 17 cell
15
astrocyte
15
body of pancreas
15
natural killer cell
15
osteoblast
15
pancreas
15
pancreatic delta cell
15
right atrium auricular region
15
tibial artery
14
CD8-positive, alpha-beta memory T cell
14
HepG2
13
GM12878
13
fibroblast of cardiac tissue
13
frontal cortex
12
ascending aorta
12
endothelial cell of umbilical vein
12
heart right ventricle
12
lymphoblastoid cell line
12
mononuclear cell
12
neuroblastoma cell
12
sigmoid colon
12
substantia nigra
11
T-helper 2 cell
11
erythroblast
11
excitatory neuron
11
foreskin fibroblast
11
neutrophil
11
omental fat pad
11
ovary
11
psoas muscle
11
putamen
11
skeletal muscle satellite cell
11
thyroid gland
11
trophoblast cell
10
Ammon's horn
10
Rhabdomyosarcoma
10
cerebellum
10
gastric cancer cell
10
glomerular visceral epithelial cell
10
left cardiac atrium
10
pancreatic stellate cell
10
skeletal muscle myoblast
10
skeletal muscle tissue
10
testis
9
H9
9
aorta
9
fibroblast of lung
9
liposarcoma
9
transverse colon
8
B-lymphoblastoid cell line
8
cardiac muscle cell
8
fibroblast cell line
8
fibroblast of dermis
8
gastrocnemius medialis
8
hepatic stellate cell
8
lymphocyte
8
mammary gland epithelial cell
8
pituitary stalk
8
prostate gland
8
skeletal muscle fiber
7
CD4-positive, alpha-beta T cell
7
IMR-90
7
amygdala
7
bronchial epithelial cell
7
colon epithelial cell
7
endocrine pancreas
7
epithelial cell of prostate
7
layer of hippocampus
7
mammary epithelial cell
7
mature neutrophil
7
memory B cell
7
muscle of trunk
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
upper lobe of left lung
6
22Rv1
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Caco-2 cell
6
GM06990
6
GM12865
6
GM19238
6
GM19239
6
GM19240
6
HUES8
6
Jurkat
6
Peyer's patch
6
WERI-Rb-1
6
anterior cingulate cortex
6
choroid plexus epithelial cell
6
diffuse intrinsic pontine glioma
6
foreskin keratinocyte
6
hypothalamus
6
iPSC derived cell line
6
induced pluripotent stem cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
plasma cell
6
skin fibroblast
6
smooth muscle cell of the coronary artery
6
temporal lobe
6
thoracic aorta
6
trophoblast
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
Chondroid Chordoma
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
Organ
7
connective tissue
Life stage
1
adult
1
unknown
Date released
3
February, 2024
1
March, 2020
1
May, 2022
1
October, 2019
1
October, 2022
Software used
2
macs
1
chromhmm
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
4
AMP2
3
AMP
month_released!
August, 2017
annotation_type!
candidate regulatory elements
biosample_type!
in vitro differentiated cells
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP