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Citing CMDGA
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Annotation type
903
chromatin state
683
gene expression
167
differential activity
161
eQTL
74
Fine-mapped variants
16
variant allelic effects
10
accessible chromatin
4
sQTL
2
hQTL
2
variant to gene
1
histone modifications
1
meQTL
1
other
1
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
DNase-seq
1
quantitative proteomics
Available data
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
tissue
Biosample term
1
cartilage tissue
1
myocyte
Organ
1
connective tissue
Life stage
1
adult
Date released
1
August, 2021
1
February, 2021
Software used
1
altius-index
1
fastqtl
1
peer
Lab
1
AMP-T2D consortium
1
ITG
Project
1
AMP
1
ITG
RFA
1
AMP
1
ITG
month_released!
August, 2017
files.file_type!
bed bed3+
Showing 2 of 2 results
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FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP