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Schema
Citing CMDGA
Clear Filters
Annotation type
86
histone modifications
18
accessible chromatin
15
gene expression
4
eQTL
3
target gene predictions
2
hQTL
1
binding sites
1
meQTL
1
sQTL
Annotation Category
4
Genetic variant effects
3
Target gene links
1
cis-regulatory elements
Annotation type Category
4
RNA-seq
1
ATAC-seq
1
ChIP-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
1
snATAC-seq
Available data
4
bed bed3+
File set status
8
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
cell line
Biosample term
56
HeLa-S3
41
H1-hESC
25
K562
22
stomach
21
A549
21
heart
19
CD14-positive monocyte
19
HFFc6
19
brain
18
adrenal gland
18
liver
18
lung
18
small intestine
16
islet of Langerhans
16
kidney
16
muscle of arm
16
placenta
15
thymus
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
13
adipose tissue
13
left lung
13
muscle of back
12
macrophage
11
hematopoietic multipotent progenitor cell
11
right lung
10
B cell
10
GM12878
10
endothelial cell
10
pericyte cell
10
pituitary stalk
10
right kidney
10
spinal cord
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
breast cancer cell
9
keratinocyte
9
left kidney
9
neural progenitor cell
9
renal pelvis
9
spleen
8
H9
8
fibroblast
8
heart left ventricle
8
lymphoblastoid cell line
8
monocyte
7
CD8-positive, alpha-beta memory T cell
7
adipocyte
7
fibroblast cell line
7
foreskin fibroblast
7
iPSC derived cell line
7
lymphocyte
7
melanoma
7
mononuclear cell
7
ovary
7
pancreas
7
psoas muscle
7
renal cortex interstitium
6
HepG2
6
T cell
6
body of pancreas
6
dendritic cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of umbilical vein
6
fibroblast of lung
6
mammary gland epithelial cell
6
mesenchymal stem cell
6
natural killer cell
6
olfactory receptor cell
6
regulatory T cell
6
sigmoid colon
6
smooth muscle cell
5
CD8-positive, alpha-beta T cell
5
HUES8
5
cardiac muscle cell
5
caudate nucleus
5
coronary artery
5
fibroblast of cardiac tissue
5
fibroblast of dermis
5
foreskin keratinocyte
5
gastrocnemius medialis
5
heart right ventricle
5
hepatocyte
5
layer of hippocampus
5
mammary epithelial cell
5
muscle of trunk
5
neutrophil
5
osteoblast
5
pancreatic ductal cell
5
prostate cancer cell line
5
transverse colon
5
trophoblast cell
4
CyT49
4
GM19238
4
GM19239
4
GM19240
4
IMR-90
4
Jurkat
4
SK-N-SH
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
aorta
4
astrocyte
4
bronchial epithelial cell
4
cerebellum
4
chorionic villus
4
colon epithelial cell
4
embryonic stem cell
4
endocrine pancreas
4
epithelial cell of prostate
4
erythroblast
4
esophagus
4
frontal cortex
4
glioblastoma multiforme cancer stem cell
4
mesendoderm
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neuroblastoma cell
4
neuronal stem cell
4
omental fat pad
4
pancreatic delta cell
4
prostate gland
4
putamen
4
retina
4
right atrium auricular region
4
skeletal muscle tissue
4
skin fibroblast
4
subcutaneous adipose tissue
4
thyroid gland
3
22Rv1
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
Ammon's horn
3
BE(2)-C
3
BJ cell
3
BJAB cell
3
CD4-positive, alpha-beta T cell
3
Caco-2 cell
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM19099
3
GM19193
3
HAP-1
3
HCT-116 cell
3
HCT116
3
HEK293
3
HL-60
3
HT-29
3
KARPAS-422 cell
3
LoVo cell
3
MCF 10A cell
3
MM.1S
3
NAMALWA cell
3
NT2-D1 cell
3
OCI-LY7
3
PC-9
3
Peyer's patch
3
SK-N-MC
3
T-cell acute lymphoblastic leukemia
3
THP-1
3
Tumor-derived cell line
3
U937
3
WERI-Rb-1
3
activated CD4-positive, alpha-beta T cell
3
acute myeloid leukemia
3
ascending aorta
3
blood cell
3
breast epithelium
3
cardiomyocytes (cardiac muscle cell)
3
chorion membrane
3
choroid plexus epithelial cell
3
dermal fibroblast
3
dermis lymphatic vessel endothelial cell
3
diffuse intrinsic pontine glioma
3
endodermal cell
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
immortal human breast epithelial cell line cell
3
liposarcoma
3
luminal epithelial cell of mammary gland
3
myotube
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neurosphere
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
Life stage
1
adult
Date released
3
January, 2022
2
May, 2021
1
February, 2021
1
January, 2021
1
May, 2020
Software used
3
qTLtools
1
abc
1
chicago
1
cicero
1
limix
1
macs
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Kyle Gaulton, UCSD
Project
7
AMP
1
T1D
RFA
7
AMP
1
T1D
month_released!
August, 2020
Showing 8 of 8 results
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Download
FileSet
DSR338LAI
released
Annotation file set
: monocyte naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR085HYL
released
Annotation file set
: monocyte CD16 naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR583OYR
released
Annotation file set
: monocyte eQTL of studay BLUEPRINT from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR693IVW
released
Annotation file set
: expression quantitative trait loci (eQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR431VOC
released
Annotation file set
: Binding sites annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR499JJX
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of monocyte
Lab:
AMP-T2D consortium
Project:
AMP