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Citing CMDGA
Clear Filters
Annotation type
1560
candidate regulatory elements
1281
target gene predictions
912
histone modifications
872
chromatin state
841
accessible chromatin
800
binding sites
615
gene expression
167
differential activity
123
variant allelic effects
115
eQTL
38
Fine-mapped variants
13
caQTL
5
hQTL
4
sQTL
4
variant to gene
meQTL
3
other
1
representative DNase hypersensitivity sites
Annotation Category
4
Genetic variant effects
Annotation type Category
4
RNA-seq
File set status
4
released
Genome assembly (visualization)
2
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
1
islet of Langerhans
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
1
pancreas
Life stage
3
adult
Date released
3
May, 2021
August, 2021
1
March, 2023
Software used
3
limix
3
sqtlseeker
1
qTLtools
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
August, 2021
annotation_type!
meQTL
organ_slims!
brain
Showing 4 of 4 results
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FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR631VBI
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP