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Citing CMDGA
Clear Filters
Annotation type
1667
candidate regulatory elements
1355
target gene predictions
960
histone modifications
944
chromatin state
882
accessible chromatin
816
binding sites
633
gene expression
167
differential activity
140
eQTL
140
variant allelic effects
74
Fine-mapped variants
13
caQTL
4
hQTL
4
variant to gene
3
sQTL
2
meQTL
2
other
1
representative DNase hypersensitivity sites
Annotation Category
3
Genetic variant effects
Annotation type Category
3
RNA-seq
File set status
3
released
Genome assembly (visualization)
1
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Biosample term
1
islet of Langerhans
1
monocyte
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
1
pancreas
Life stage
2
adult
Date released
2
May, 2021
August, 2021
1
March, 2023
Software used
2
limix
2
sqtlseeker
1
qTLtools
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
August, 2021
biosample_term_name!
naive thymus-derived CD4-positive, alpha-beta T cell
Showing 3 of 3 results
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FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP