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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
Target gene links
6
cis-regulatory elements
Annotation type Category
6
ChIP-seq
1
DNase-seq
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
cell line
1
stem cell
Biosample term
110
monocyte
64
heart
62
stomach
56
kidney
55
brain
51
lung
50
muscle of arm
45
small intestine
44
adrenal gland
44
placenta
42
A549
42
muscle of leg
41
large intestine
41
muscle of back
40
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
39
left lung
33
right lung
33
thymus
32
hematopoietic multipotent progenitor cell
31
right kidney
30
renal cortex interstitium
29
islet of Langerhans
29
liver
29
renal pelvis
27
left kidney
26
B cell
25
spinal cord
24
heart left ventricle
24
spleen
23
CD4-positive, alpha-beta memory T cell
22
hepatocyte
20
breast cancer cell
20
epithelial cell of proximal tubule
19
adipose tissue
19
body of pancreas
19
regulatory T cell
19
tibial nerve
18
MCF-7
17
K562
17
caudate nucleus
17
foreskin keratinocyte
17
glomerular endothelial cell
16
T-helper 1 cell
16
substantia nigra
15
CD8-positive, alpha-beta memory T cell
15
T-helper 17 cell
15
induced pluripotent stem cell
15
sigmoid colon
15
subcutaneous adipose tissue
14
EndoC_BH1
14
coronary artery
14
foreskin fibroblast
14
keratinocyte
14
neural progenitor cell
14
pancreatic ductal cell
14
retina
14
trophoblast cell
13
adipocyte
13
cerebellum
13
endothelial cell
13
endothelial cell of umbilical vein
13
macrophage
13
mononuclear cell
13
omental fat pad
13
right atrium auricular region
13
testis
13
tibial artery
12
CD14-positive monocyte
12
T-helper 2 cell
12
cardiac muscle cell
12
frontal cortex
12
layer of hippocampus
12
neuroblastoma cell
12
ovary
12
skeletal muscle myoblast
12
skeletal muscle tissue
12
temporal lobe
12
thyroid gland
12
upper lobe of left lung
11
CD4-positive, alpha-beta T cell
11
T cell
11
ascending aorta
11
fibroblast of lung
11
gastrocnemius medialis
11
heart right ventricle
11
lymphoblastoid cell line
11
mesenchymal stem cell
11
natural killer cell
11
neutrophil
11
putamen
11
transverse colon
10
HepG2
10
bronchial epithelial cell
10
chorionic villus
10
gastric cancer cell
10
mammary epithelial cell
10
mammary gland epithelial cell
10
muscle of trunk
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
pancreas
10
progenitor cell of endocrine pancreas
10
prostate gland
10
psoas muscle
9
HeLa-S3
9
Rhabdomyosarcoma
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
embryonic stem cell
9
endocrine pancreas
9
fibroblast
9
liposarcoma
9
neurosphere
9
osteoblast
8
22Rv1
8
Ammon's horn
8
Peyer's patch
8
endothelial cell of hepatic sinusoid
8
fibroblast of dermis
8
left cardiac atrium
8
neuronal stem cell
8
right renal pelvis
8
smooth muscle cell
7
B-lymphoblastoid cell line
7
GM12878
7
H9
7
HEK293
7
amygdala
7
aorta
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
fibroblast of cardiac tissue
7
left renal cortex interstitium
7
left renal pelvis
7
mature neutrophil
7
pancreatic acinar cell
7
right lobe of liver
7
right renal cortex interstitium
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM12875
6
IMR-90
6
SK-N-DZ
6
angular gyrus
6
anterior cingulate cortex
6
cingulate gyrus
6
dermis blood vessel endothelial cell
6
duodenal mucosa
6
endodermal cell
6
epithelial cell of prostate
6
esophagus
6
foreskin melanocyte
6
glomerular visceral epithelial cell
6
hESC cell
6
hepatic stellate cell
6
hypothalamus
6
lower leg skin
6
mesodermal cell
6
neuroblastoma cell line
6
nucleus accumbens
6
pancreatic beta cell
6
thoracic aorta
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
Organ
6
embryo
Life stage
3
embryonic
Date released
August, 2021
2
February, 2021
2
September, 2022
1
August, 2017
1
October, 2022
Software used
3
chromhmm
2
macs
1
r
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
month_released!
August, 2021
annotation_type!
accessible chromatin
annotation_category!
Target gene links
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP