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Schema
Citing CMDGA
Clear Filters
Annotation type
accessible chromatin
2
candidate regulatory elements
2
chromatin state
2
gene expression
2
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Gene expression levels
2
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
2
bed bed9
1
bigBed bed9
File set status
8
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
66
muscle of arm
56
muscle of leg
54
muscle of back
19
psoas muscle
17
gastrocnemius medialis
17
muscle of trunk
15
skeletal muscle tissue
10
esophagus muscularis mucosa
9
stomach smooth muscle
8
skeletal muscle satellite cell
7
gastroesophageal sphincter
6
LHCN-M2
5
A673
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
myotube
5
skeletal muscle cell
4
SJCRH30
4
rectum smooth muscle tissue
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
2
muscle of leg
2
cardiac muscle myoblast
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
hindlimb muscle
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
forelimb muscle
1
hindlimb muscle
1
rectal smooth muscle tissue
1
smooth muscle tissue
Organ
8
musculature of body
Life stage
6
adult
Date released
3
September, 2022
1
February, 2020
1
February, 2021
1
February, 2024
1
November, 2021
1
October, 2019
Software used
4
r
2
chromhmm
1
abc
1
deeptools
1
encode-ccres
1
samtools
1
umitools
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
7
AMP
1
ENCODE
RFA
6
AMP
1
AMP2
1
ENCODE3
month_released!
August, 2021
annotation_type!
accessible chromatin
Showing 8 of 8 results
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Download
FileSet
DSR972CPB
released
Annotation file set
: Candidate regulatory elements for BSS01576 skeletal muscle satellite cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR326ORZ
released
Annotation file set
: Target gene predictions for BSS01576 skeletal muscle satellite cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR365BMM
released
Annotation file set
: Chromatin states for BSS01576 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR920UVL
released
Annotation file set
: Target gene predictions of Satellite Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR650BYN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle satellite cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR919OZT
released
Annotation file set
: Cell type gene expression mean TPM and bw of skeletal muscle satellite cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR147UBG
released
Annotation file set
: Gene expression levels of Skeletal muscle satellite cell from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR195QYE
released
Annotation file set
: ChromHMM 15-state model for adult Skeletal Muscle Satellite Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP