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Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
2
binding sites
1
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
7
cis-regulatory elements
1
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
26
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
46
CD8-positive, alpha-beta T cell
28
retina
27
stomach
25
heart
24
islet of Langerhans
22
liver
20
breast cancer cell
20
kidney
20
pigmented layer of retina
19
CD14-positive monocyte
19
brain
18
adrenal gland
18
lung
18
muscle of arm
17
adipocyte
17
embryonic stem cell
17
placenta
17
small intestine
16
large intestine
15
B cell
15
common myeloid progenitor, CD34-positive
15
monocyte
15
muscle of back
15
muscle of leg
14
EndoC_BH1
14
thymus
13
CD4-positive, alpha-beta T cell
13
left lung
13
spinal cord
12
foreskin fibroblast
12
hematopoietic multipotent progenitor cell
12
mammary epithelial cell
12
neuroblastoma cell
12
renal cortex interstitium
12
right lung
11
MCF-7
11
cardiac muscle cell
11
endothelial cell
11
renal pelvis
11
spleen
10
Rhabdomyosarcoma
10
gastric cancer cell
10
heart left ventricle
10
keratinocyte
10
macrophage
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
neuronal stem cell
10
pancreas
10
retinal pigment epithelial cell
9
HepG2
9
adipose tissue
9
diffuse intrinsic pontine glioma
9
endothelial cell of umbilical vein
9
liposarcoma
9
mesenchymal stem cell
9
natural killer cell
9
right kidney
9
skeletal muscle myoblast
9
subcutaneous adipose tissue
8
A549
8
B-lymphoblastoid cell line
8
fibroblast
8
fibroblast cell line
8
foreskin keratinocyte
8
osteoblast
8
pituitary stalk
7
GM12878
7
H9
7
Jurkat
7
K562
7
esophageal adenocarcinoma
7
mature neutrophil
7
neural progenitor cell
7
pancreatic beta cell
7
pancreatic ductal cell
7
regulatory T cell
6
Chondroid Chordoma
6
H1-hESC
6
HEK293
6
IMR-90
6
LNCAP
6
Rh-4 cell
6
SGBS preadipocytes
6
T-cell acute lymphoblastic leukemia
6
T-helper 1 cell
6
bronchial epithelial cell
6
chondrocyte
6
fibroblast of lung
6
hESC cell
6
induced pluripotent stem cell
6
left kidney
6
neuroblastoma cell line
6
neutrophil
6
pancreatic delta cell
6
sigmoid colon
6
smooth muscle cell
6
testis
6
trophoblast cell
6
upper lobe of left lung
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
HAP-1
5
HCT-116 cell
5
HL-60
5
HT-29
5
KARPAS-422 cell
5
MM.1S
5
OCI-LY7
5
PC-9
5
Peyer's patch
5
SK-N-MC
5
T cell
5
acute myeloid leukemia
5
choroid plexus epithelial cell
5
lymphoblastoid cell line
5
mesendoderm
5
osteosarcoma
5
ovary
5
pancreatic alpha cell
5
prostate cancer cell line
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
CD1c-positive myeloid dendritic cell
4
CD4-positive helper T cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM19240
4
GM23248
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
HeLa-S3
4
Ishikawa
4
LHCN-M2
4
LoVo cell
4
MDA-MB-231 cell
4
MG63
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
PANC-1 cell
4
PC-3
4
RPMI8226
4
RS4-11 cell
4
RWPE1
4
SK-N-DZ
4
SK-N-SH
4
SK-N-SH_RA
4
SW480
4
T-cell
4
T-helper 17 cell
4
U2OS
4
U937
4
WERI-Rb-1
4
acute myeloid leukemia cell
4
cartilage tissue
4
caudate nucleus
4
coronary artery
4
diffuse large B-cell lymphoma
4
erythroblast
4
erythroid cell
4
esophageal squamous cell carcinoma
4
esophagus squamous epithelium
4
fibroblast of cardiac tissue
4
foreskin melanocyte
4
gastrocnemius medialis
4
heart right ventricle
4
hepatocyte
4
mammary gland epithelial cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
psoas muscle
4
right renal pelvis
4
squamous cell lung carcinoma
4
substantia nigra
4
synovial sarcoma cell
4
tibial nerve
4
tracheal epithelial cell
4
triple-negative breast cancer
4
type I muscle cell
3
786-O cell
3
A-673 cell
3
Ammon's horn
3
BJAB cell
3
COLO-320 cell
3
D341 Med cell
3
DND-41 cell
Organ
8
lung
Life stage
3
adult
Date released
5
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
r
3
encode-ccres
3
macs
1
abc
1
chromhmm
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
month_released!
August, 2022
software_used.software.name!
r
assembly!
GRCh38
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR641NTB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR496BBN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885NAO
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A549
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761KYR
released
Annotation file set
: Histone modifications annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008HJP
released
Annotation file set
: Accessible chromatin annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP