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Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
gene expression
2
target gene predictions
Annotation Category
2
Gene expression levels
2
Target gene links
2
cis-regulatory elements
Annotation type Category
ChIP-seq
25
DNase-seq
2
RNA-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
10
bed bed3+
bigWig
2
tsv
File set status
6
released
Genome assembly (visualization)
4
hg19
Organism
6
Homo sapiens
Biosample type
4
primary cell
2
in vitro differentiated cells
Biosample term
52
HeLa-S3
47
H1-hESC
34
islet of Langerhans
26
monocyte
24
endothelial cell
20
EndoC_BH1
19
HFFc6
19
macrophage
18
K562
18
neural progenitor cell
17
epithelial cell of proximal tubule
17
induced pluripotent stem cell
16
glomerular endothelial cell
16
subcutaneous adipose tissue
15
CD14-positive monocyte
15
liver
14
fibroblast
14
pancreatic ductal cell
14
smooth muscle cell
13
hepatocyte
12
regulatory T cell
11
adipocyte
11
adipose tissue
11
cardiomyocytes
10
coronary artery
10
kidney
10
pancreatic acinar cell
10
pancreatic delta cell
10
pituitary stalk
10
retina
10
right atrium auricular region
10
tibial nerve
9
CD8-positive, alpha-beta T cell
9
T-helper 1 cell
9
extended pluripotent stem (EPS) cells
9
frontal cortex
9
pancreatic alpha cell
9
pancreatic beta cell
9
pericyte cell
9
progenitor cell of endocrine pancreas
9
putamen
9
tibial artery
8
GM12878
8
T-helper 17 cell
8
body of pancreas
8
cardiomyocytes (cardiac muscle cell)
8
caudate nucleus
8
embryonic stem cell
8
heart
7
Ammon's horn
7
H9
7
cerebellum
7
dendritic cell
7
glomerular visceral epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
mesenchymal stem cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
omental fat pad
7
pancreas
7
pigmented layer of retina
7
stomach
7
substantia nigra
6
B cell
6
CD4-positive helper T cell
6
T cell
6
adrenal gland
6
amygdala
6
anterior cingulate cortex
6
ascending aorta
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
glutamatergic neuron
6
heart left ventricle
6
hypothalamus
6
iPSC derived cell line
6
kidney interstitial cell
6
lymphocyte
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
natural killer cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic stellate cell
6
skeletal muscle fiber
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
brain
5
chondrocyte
5
gastrocnemius medialis(Muscle - Skeletal)
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
left ventricle myocardium
5
memory B cell
5
mesangial cell
5
neutrophil
5
osteoblast
5
ovary
5
psoas muscle
5
retinal pigment epithelial cell
5
right lobe of liver
5
spleen
5
type I muscle cell
5
type II muscle cell
4
CyT49
4
SGBS preadipocytes
4
T-helper 2 cell
4
adult endothelial progenitor cell
4
astrocyte
4
bone tissue
4
cartilage tissue
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
gamma-delta T cell
4
heart right ventricle
4
keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
nephron progenitor
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
skeletal muscle myoblast
4
skeletal muscle satellite cell
4
small intestine
4
smooth muscle cell of the coronary artery
4
spinal cord
4
thymus
4
uterus
4
vascular associated smooth muscle cell
4
visceral abdominal adipose tissue
3
CD4-positive, alpha-beta T cell
3
Cycling Mononuclear Phagocyte
3
HepG2
3
Jurkat
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
T follicular helper cell
3
U937
3
activated CD4-positive, alpha-beta T cell
Date released
3
May, 2021
2
June, 2020
1
May, 2020
Software used
2
macs
2
r
1
abc
1
chicago
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
month_released!
August, 2022
files.file_type!
bigWig
annotation_type_category!
ChIP-seq
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR534CRD
released
Annotation file set
: GSE118165 gene expression annotation of normal B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR630ZBK
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143KXJ
released
Annotation file set
: enhancer-gene predicton of B_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR924GPB
released
Annotation file set
: Accessible chromatin annotation for Blood CD20+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR006MLI
released
Annotation file set
: Accessible chromatin annotation for Blood B-cell (CD19+) from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR608ZFL
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of B cell
Lab:
AMP-T2D consortium
Project:
AMP