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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
target gene predictions
Annotation Category
1
Target gene links
1
cis-regulatory elements
Annotation type Category
ChIP-seq
16
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
52
HeLa-S3
47
H1-hESC
42
monocyte
39
islet of Langerhans
endothelial cell
30
macrophage
28
fibroblast
25
hepatocyte
24
retina
21
EndoC_BH1
21
pancreatic ductal cell
21
smooth muscle cell
20
pigmented layer of retina
19
HFFc6
19
kidney
19
pericyte cell
18
K562
18
neural progenitor cell
18
pancreatic beta cell
17
epithelial cell of proximal tubule
17
induced pluripotent stem cell
17
pancreatic acinar cell
17
pancreatic alpha cell
16
glomerular endothelial cell
16
liver
16
pancreatic delta cell
16
subcutaneous adipose tissue
15
CD14-positive monocyte
15
regulatory T cell
14
excitatory neuron
13
CD8-positive, alpha-beta T cell
13
adipocyte
12
B cell
12
adipose tissue
12
astrocyte
12
coronary artery
11
T cell
11
T-helper 1 cell
11
cardiomyocytes
10
T-helper 17 cell
10
endothelial cell of hepatic sinusoid
10
heart
10
pancreas
10
pancreatic stellate cell
10
pituitary stalk
10
right atrium auricular region
9
extended pluripotent stem (EPS) cells
9
memory B cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
natural killer cell
9
progenitor cell of endocrine pancreas
9
putamen
9
retinal pigment epithelial cell
9
skeletal muscle fiber
9
tibial artery
8
GM12878
8
cardiomyocytes (cardiac muscle cell)
8
caudate nucleus
8
embryonic stem cell
8
frontal cortex
8
glomerular visceral epithelial cell
8
glutamatergic neuron
8
heart left ventricle
8
mesenchymal stem cell
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
osteoblast
8
tibial nerve
7
Ammon's horn
7
H9
7
dendritic cell
7
erythroblast
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphoblastoid cell line
7
omental fat pad
7
skeletal muscle satellite cell
7
type I muscle cell
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
T-helper 2 cell
6
adrenal gland
6
ascending aorta
6
body of pancreas
6
cardiac precursors (cardiac muscle cell)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
gamma-delta T cell
6
iPSC derived cell line
6
keratinocyte
6
lymphocyte
6
mesangial cell
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
spleen
6
stomach
6
substantia nigra
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
amygdala
5
anterior cingulate cortex
5
basal cell
5
brain
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
cerebellum
5
cerebellum (Hemisphere)
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
heart right ventricle
5
hepatic stellate cell
5
hypothalamus
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
neutrophil
5
nucleus accumbens
5
ovary
5
pancreatic endothelial cell
5
psoas muscle
4
C1 segment of cervical spinal cord
4
CD4-positive, alpha-beta T cell
4
CyT49
4
HepG2
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
activated CD4-positive, alpha-beta T cell
4
adult endothelial progenitor cell
4
blood vessel smooth muscle cell
4
bone tissue
4
cartilage tissue
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
luminal epithelial cell of mammary gland
Organ
2
mammary gland
Date released
1
June, 2020
1
May, 2021
Software used
1
abc
1
macs
Lab
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
2
AMP
RFA
2
AMP
month_released!
February, 2020
biosample_term_name!
endothelial cell
annotation_type_category!
ChIP-seq
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR249DLQ
released
Annotation file set
: enhancer-gene predicton of MCF-7-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR645VUL
released
Annotation file set
: Accessible chromatin annotation for Breast MCF-7 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP