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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
in vitro differentiated cells
Biosample term
131
monocyte
88
heart
86
stomach
81
kidney
72
brain
67
lung
67
muscle of arm
64
HeLa-S3
62
A549
62
small intestine
61
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
CD8-positive, alpha-beta T cell
50
neural progenitor cell
47
thymus
46
liver
45
right lung
44
B cell
43
hematopoietic multipotent progenitor cell
42
islet of Langerhans
42
right kidney
41
K562
41
endothelial cell
40
renal cortex interstitium
40
renal pelvis
38
retina
36
left kidney
35
spinal cord
33
hepatocyte
33
spleen
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
macrophage
31
CD14-positive monocyte
31
heart left ventricle
30
adipose tissue
28
regulatory T cell
26
MCF-7
26
adipocyte
25
pancreatic ductal cell
25
smooth muscle cell
23
T-helper 1 cell
23
natural killer cell
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
T cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
pericyte cell
22
sigmoid colon
21
T-helper 17 cell
21
keratinocyte
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
pigmented layer of retina
19
body of pancreas
19
foreskin fibroblast
19
ovary
19
pancreas
19
tibial nerve
18
HFFc6
18
caudate nucleus
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
pancreatic beta cell
18
thyroid gland
18
transverse colon
17
T-helper 2 cell
17
astrocyte
17
cardiac muscle cell
17
embryonic stem cell
17
heart right ventricle
17
mesenchymal stem cell
17
muscle of trunk
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
psoas muscle
17
testis
16
chorionic villus
16
coronary artery
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
retinal pigment epithelial cell
16
subcutaneous adipose tissue
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
HepG2
15
mammary gland epithelial cell
15
neutrophil
15
pancreatic delta cell
15
skeletal muscle myoblast
15
skeletal muscle tissue
14
H9
14
endocrine pancreas
14
prostate gland
14
right atrium auricular region
14
tibial artery
13
Peyer's patch
13
bronchial epithelial cell
13
excitatory neuron
13
neurosphere
13
substantia nigra
12
fibroblast of dermis
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
skeletal muscle satellite cell
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
left cardiac atrium
11
left renal pelvis
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
aorta
10
ascending aorta
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
frontal cortex
10
gastric cancer cell
10
hepatic stellate cell
10
lymphocyte
10
neuronal stem cell
omental fat pad
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
glomerular visceral epithelial cell
9
kidney tubule cell
9
liposarcoma
9
parathyroid adenoma
9
putamen
9
tongue
9
trophoblast
9
vagina
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cerebellum
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
AG04449 cell
7
Ammon's horn
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
esophagus
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast cell line
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
memory B cell
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
June, 2020
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
month_released!
February, 2020
March, 2020
biosample_term_name!
omental fat pad
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP