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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
131
monocyte
67
heart
67
stomach
65
kidney
61
HeLa-S3
54
brain
53
H1-hESC
51
CD8-positive, alpha-beta T cell
51
lung
51
muscle of arm
47
adrenal gland
47
small intestine
46
neural progenitor cell
46
placenta
44
A549
43
large intestine
43
muscle of leg
42
islet of Langerhans
41
common myeloid progenitor, CD34-positive
41
endothelial cell
41
muscle of back
39
left lung
39
liver
36
B cell
36
thymus
35
K562
35
retina
34
right lung
33
hematopoietic multipotent progenitor cell
32
fibroblast
32
macrophage
32
right kidney
31
hepatocyte
31
renal cortex interstitium
31
renal pelvis
28
spinal cord
27
CD14-positive monocyte
27
left kidney
27
spleen
25
pancreatic ductal cell
25
regulatory T cell
24
adipocyte
24
adipose tissue
24
smooth muscle cell
23
CD4-positive, alpha-beta memory T cell
23
heart left ventricle
22
EndoC_BH1
21
MCF-7
21
epithelial cell of proximal tubule
21
pericyte cell
20
breast cancer cell
20
natural killer cell
20
pigmented layer of retina
19
T-helper 1 cell
19
glomerular endothelial cell
19
keratinocyte
18
HFFc6
18
T cell
18
T-helper 17 cell
18
foreskin keratinocyte
18
pancreas
18
pancreatic beta cell
17
foreskin fibroblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
trophoblast cell
16
astrocyte
16
cardiac muscle cell
16
endothelial cell of hepatic sinusoid
16
induced pluripotent stem cell
16
osteoblast
16
ovary
16
sigmoid colon
16
subcutaneous adipose tissue
15
CD4-positive, alpha-beta T cell
15
CD8-positive, alpha-beta memory T cell
15
mesenchymal stem cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
tibial nerve
15
transverse colon
14
GM12878
14
HepG2
14
body of pancreas
14
endothelial cell of umbilical vein
14
gastrocnemius medialis
14
mononuclear cell
14
testis
14
thyroid gland
13
H9
13
T-helper 2 cell
13
caudate nucleus
13
coronary artery
13
excitatory neuron
13
fibroblast of cardiac tissue
13
layer of hippocampus
13
neutrophil
13
psoas muscle
13
upper lobe of left lung
12
embryonic stem cell
12
fibroblast of lung
12
lymphoblastoid cell line
12
mammary epithelial cell
12
muscle of trunk
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
12
prostate gland
12
right atrium auricular region
12
skeletal muscle myoblast
12
skeletal muscle tissue
11
chorionic villus
11
erythroblast
11
heart right ventricle
11
mammary gland epithelial cell
10
Peyer's patch
10
Rhabdomyosarcoma
10
bronchial epithelial cell
10
endocrine pancreas
10
gastric cancer cell
10
left renal cortex interstitium
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal pelvis
10
skeletal muscle satellite cell
10
substantia nigra
10
tibial artery
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
epithelial cell of prostate
9
fibroblast of dermis
9
left cardiac atrium
9
left renal pelvis
9
liposarcoma
9
lymphocyte
9
neurosphere
9
skin fibroblast
8
22Rv1
8
breast epithelium
8
choroid plexus epithelial cell
8
frontal cortex
8
glomerular visceral epithelial cell
8
hepatic stellate cell
8
omental fat pad
8
pituitary stalk
8
putamen
8
skeletal muscle fiber
8
temporal lobe
7
B-lymphoblastoid cell line
7
CD4-positive helper T cell
7
GM12865
7
HEK293
7
aorta
7
colonic mucosa
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
fibroblast cell line
7
kidney tubule cell
7
lower leg skin
7
mature neutrophil
7
memory B cell
7
thoracic aorta
7
trophoblast
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
Ammon's horn
6
BE(2)-C
6
BJ cell
6
CD1c-positive myeloid dendritic cell
6
Chondroid Chordoma
6
GM06990
6
HAP-1
6
HT-29
6
HUES8
6
IMR-90
6
Jurkat
6
LNCAP
6
NAMALWA cell
6
SK-N-MC
6
ascending aorta
6
chondrocyte
6
cingulate gyrus
6
colon epithelial cell
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of pulmonary artery
6
globus pallidus
6
hESC cell
6
iPSC derived cell line
6
immortal human breast epithelial cell line cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
parathyroid adenoma
6
plasma cell
Life stage
3
embryonic
Date released
3
February, 2021
2
September, 2022
1
June, 2020
March, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
month_released!
February, 2020
March, 2020
files.file_type!
bed bed9
Showing 7 of 7 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP