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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
gene expression
Annotation Category
5
cis-regulatory elements
2
Gene expression levels
Genetic variant effects
Annotation type Category
5
snATAC-seq
2
snRNA-seq
Available data
5
bed bed3+
3
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
7
primary cell
Biosample term
123
monocyte
87
heart
85
stomach
79
kidney
69
brain
67
lung
66
muscle of arm
64
HeLa-S3
62
A549
62
small intestine
61
adrenal gland
59
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
thymus
45
right lung
44
B cell
43
hematopoietic multipotent progenitor cell
41
K562
41
right kidney
40
liver
39
renal cortex interstitium
39
renal pelvis
37
retina
36
endothelial cell
36
left kidney
35
hepatocyte
34
spinal cord
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
heart left ventricle
26
MCF-7
26
adipose tissue
26
regulatory T cell
25
islet of Langerhans
24
adipocyte
24
pancreatic ductal cell
23
fibroblast
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
EndoC_BH1
22
T-helper 1 cell
22
foreskin keratinocyte
22
natural killer cell
22
pericyte cell
21
epithelial cell of proximal tubule
21
macrophage
20
T-helper 17 cell
20
breast cancer cell
20
keratinocyte
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
20
smooth muscle cell
19
T cell
19
foreskin fibroblast
19
glomerular endothelial cell
19
ovary
19
pancreas
18
HFFc6
18
body of pancreas
18
embryonic stem cell
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
heart right ventricle
17
HepG2
17
astrocyte
17
mesenchymal stem cell
17
muscle of trunk
17
osteoblast
17
pancreatic beta cell
17
thyroid gland
17
transverse colon
16
T-helper 2 cell
16
caudate nucleus
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
pancreatic acinar cell
16
pancreatic alpha cell
16
retinal pigment epithelial cell
16
testis
16
tibial nerve
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
cardiac muscle cell
15
layer of hippocampus
14
H9
14
endocrine pancreas
14
mammary gland epithelial cell
14
pancreatic delta cell
14
skeletal muscle myoblast
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
coronary artery
13
excitatory neuron
13
neurosphere
13
skeletal muscle tissue
12
fibroblast of dermis
12
mammary epithelial cell
12
neuroblastoma cell
12
prostate gland
12
skeletal muscle satellite cell
12
tibial artery
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
left renal cortex interstitium
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
omental fat pad
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right atrium auricular region
10
right renal pelvis
10
skin fibroblast
10
substantia nigra
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
ascending aorta
9
cardiomyocytes
9
choroid plexus epithelial cell
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
glomerular visceral epithelial cell
9
hepatic stellate cell
9
kidney tubule cell
9
left renal pelvis
9
liposarcoma
9
neutrophil
9
parathyroid adenoma
9
right renal cortex interstitium
9
thoracic aorta
9
tongue
8
Ammon's horn
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
subcutaneous adipose tissue
8
vagina
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
cerebellum
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
frontal cortex
7
mature neutrophil
Organ
7
musculature of body
Date released
4
February, 2024
3
November, 2021
Software used
5
macs
2
deeptools
2
r
2
samtools
2
umitools
Lab
4
Stephen Parker, UMich
3
Bing Ren, UCSD
Project
4
AMP
3
ENCODE
RFA
4
AMP2
3
ENCODE3
month_released!
February, 2020
annotation_category!
Genetic variant effects
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR584RYA
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 3 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR222MBS
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR958BVX
released
Annotation file set
: Accessible chromatin annotation of Fetal Skeletal Myocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR887UQH
released
Annotation file set
: Cell type chromatin broad peaks and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR353GUO
released
Annotation file set
: Cell type chromatin broad peaks and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR040MIE
released
Annotation file set
: Cell type gene expression mean TPM and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR985XYU
released
Annotation file set
: Cell type gene expression mean TPM and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP