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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
target gene predictions
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
3
ATAC-seq
3
DNase-seq
3
H3K27ac ChIP-Seq
3
snATAC-seq
Available data
6
bed bed3+
3
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
6
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
1
tissue
Biosample term
2
trophoblast cell
1
placenta
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
trophoblast giant cell
Organ
454
epithelium
178
kidney
125
connective tissue
115
pancreas
68
vasculature
47
blood vessel
41
liver
36
musculature of body
32
intestine
20
brain
18
heart
18
lung
17
skin of body
14
large intestine
14
stomach
13
adrenal gland
10
mammary gland
10
pituitary gland
9
lymphatic vessel
8
embryo
7
artery
6
adipose tissue
6
blood
6
bodily fluid
6
esophagus
6
extraembryonic component
6
small intestine
4
bronchus
4
eye
4
thyroid gland
4
uterus
3
bone element
3
bone marrow
3
gonad
3
limb
3
ovary
3
placenta
3
prostate gland
2
thymus
2
vein
1
breast
1
lymph node
1
penis
1
spinal cord
1
spleen
Date released
3
May, 2021
3
November, 2021
Software used
3
abc
3
macs
Lab
AMP-T2D consortium
3
Bing Ren, UCSD
3
Jesse Engreitz, Stanford University
Project
3
AMP
3
ENCODE
RFA
3
AMP
3
ENCODE3
month_released!
February, 2020
lab.title!
AMP-T2D consortium
Showing 6 of 6 results
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Download
FileSet
DSR806IKQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Syncitiotrophoblast,Cytotrophoblast,Trophoblast Giant from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR983RIG
released
Annotation file set
: Accessible chromatin annotation of Fetal Hematopoeitic Stem Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR100TUS
released
Annotation file set
: Accessible chromatin annotation of Fetal Placental Endothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR630TXR
released
Annotation file set
: enhancer-gene predicton of trophoblast_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR831KJP
released
Annotation file set
: enhancer-gene predicton of placenta-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR250DDG
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Trophoblast_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP