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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
111
monocyte
66
heart
64
stomach
62
HeLa-S3
57
A549
55
brain
52
H1-hESC
51
lung
49
muscle of arm
49
small intestine
48
adrenal gland
46
kidney
45
placenta
44
neural progenitor cell
43
muscle of leg
41
large intestine
40
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
39
left lung
39
muscle of back
38
K562
38
liver
37
thymus
34
right lung
32
hematopoietic multipotent progenitor cell
31
B cell
31
right kidney
29
islet of Langerhans
29
renal pelvis
28
renal cortex interstitium
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
left kidney
26
adipose tissue
26
spinal cord
23
heart left ventricle
22
spleen
21
CD8-positive, alpha-beta memory T cell
21
regulatory T cell
20
EndoC_BH1
20
adipocyte
20
body of pancreas
20
endothelial cell
20
tibial nerve
19
HFFc6
19
hepatocyte
19
macrophage
19
retina
18
MCF-7
18
T cell
18
T-helper 1 cell
18
trophoblast cell
17
T-helper 17 cell
17
caudate nucleus
17
mononuclear cell
17
psoas muscle
17
sigmoid colon
16
ovary
16
right atrium auricular region
16
smooth muscle cell
15
coronary artery
15
thyroid gland
15
tibial artery
14
fibroblast
14
frontal cortex
14
heart right ventricle
14
mesenchymal stem cell
14
pancreatic ductal cell
13
GM12878
13
HepG2
13
T-helper 2 cell
13
endothelial cell of umbilical vein
13
fibroblast of lung
13
gastrocnemius medialis
13
natural killer cell
13
pancreas
13
subcutaneous adipose tissue
13
substantia nigra
13
transverse colon
12
ascending aorta
12
cerebellum
12
chorionic villus
12
embryonic stem cell
12
endocrine pancreas
12
foreskin keratinocyte
12
mammary gland epithelial cell
12
muscle of trunk
12
neutrophil
12
omental fat pad
11
aorta
11
fibroblast of cardiac tissue
11
fibroblast of dermis
11
testis
10
Ammon's horn
10
H9
10
Peyer's patch
10
foreskin fibroblast
10
putamen
10
skeletal muscle myoblast
10
skeletal muscle tissue
9
chorion membrane
9
endothelial cell of hepatic sinusoid
9
keratinocyte
9
layer of hippocampus
9
left cardiac atrium
9
pancreatic delta cell
9
pericyte cell
9
upper lobe of left lung
8
SK-N-SH
8
angular gyrus
8
breast epithelium
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
naive T cell
8
pancreatic acinar cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
skeletal muscle satellite cell
8
skin fibroblast
8
temporal lobe
8
trophoblast
7
NAMALWA cell
7
SK-N-DZ
7
astrocyte
7
cardiac muscle cell
7
cingulate gyrus
7
endometrium adenocarcinoma
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
kidney tubule cell
7
limb
7
lymphoblastoid cell line
7
pancreatic beta cell
7
thoracic aorta
6
22Rv1
6
Brodmann (1909) area 46
6
CD4-positive helper T cell
6
CD4-positive, alpha-beta T cell
6
GM19240
6
IMR-90
6
KARPAS-422 cell
6
LNCaP clone FGC
6
T47D
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
bronchial epithelial cell
6
cardiomyocytes (cardiac muscle cell)
6
colonic mucosa
6
glomerular endothelial cell
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
left renal cortex interstitium
6
left renal pelvis
6
mucosa of rectum
6
neurosphere
6
osteoblast
6
pancreatic alpha cell
6
pigmented layer of retina
6
retinal pigment epithelial cell
6
right lobe of liver
6
tongue
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
Life stage
3
embryonic
Date released
February, 2021
3
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
month_released!
February, 2021
annotation_type!
sQTL
files.file_type!
bigWig
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP