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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
6
hg19
GRCh38
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
45
heart
44
stomach
42
CD8-positive, alpha-beta T cell
39
A549
35
brain
34
lung
33
adrenal gland
33
muscle of arm
33
small intestine
31
kidney
30
liver
30
placenta
30
retina
28
islet of Langerhans
28
large intestine
28
monocyte
28
muscle of leg
27
common myeloid progenitor, CD34-positive
26
B cell
26
left lung
26
muscle of back
26
thymus
23
CD14-positive monocyte
23
right lung
22
hematopoietic multipotent progenitor cell
21
right kidney
20
EndoC_BH1
20
adipose tissue
20
pigmented layer of retina
20
renal pelvis
19
adipocyte
19
renal cortex interstitium
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
regulatory T cell
18
spinal cord
17
neural progenitor cell
16
K562
16
T-helper 1 cell
15
T-helper 17 cell
15
endothelial cell
15
heart left ventricle
15
pancreatic ductal cell
15
spleen
14
CD8-positive, alpha-beta memory T cell
14
H1-hESC
13
MCF-7
13
embryonic stem cell
13
hepatocyte
13
pancreatic delta cell
13
sigmoid colon
12
T cell
12
body of pancreas
12
mesenchymal stem cell
12
natural killer cell
12
pancreatic beta cell
12
trophoblast cell
11
T-helper 2 cell
11
mononuclear cell
11
ovary
11
pancreatic alpha cell
11
psoas muscle
10
caudate nucleus
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
gastrocnemius medialis
10
heart right ventricle
10
macrophage
10
skeletal muscle myoblast
10
thyroid gland
10
tibial nerve
9
extended pluripotent stem (EPS) cells
9
foreskin keratinocyte
9
neutrophil
9
pancreas
9
smooth muscle cell
9
transverse colon
8
HeLa-S3
8
HepG2
8
chorionic villus
8
coronary artery
8
endocrine pancreas
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
foreskin fibroblast
8
frontal cortex
8
muscle of trunk
8
pancreatic acinar cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
7
Peyer's patch
7
aorta
7
chorion membrane
7
dendritic cell
7
fibroblast
7
induced pluripotent stem cell
7
keratinocyte
7
layer of hippocampus
7
mammary gland epithelial cell
7
retinal pigment epithelial cell
7
right atrium auricular region
7
tibial artery
6
GM12878
6
SGBS preadipocytes
6
SK-N-SH
6
alternatively activated macrophage
6
breast epithelium
6
cardiac muscle cell
6
cardiomyocytes (cardiac muscle cell)
6
cerebellum
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
epithelial cell of proximal tubule
6
erythroblast
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
immortal human breast epithelial cell line cell
6
kidney tubule cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
omental fat pad
6
pancreatic stellate cell
6
skeletal muscle tissue
6
subcutaneous adipose tissue
6
testis
6
trophoblast
6
upper lobe of left lung
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Ammon's horn
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
IMR-90
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
KARPAS-422 cell
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
NAMALWA cell
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
SK-N-DZ
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
ascending aorta
5
bronchial epithelial cell
5
central memory CD8-positive, alpha-beta T cell
5
chondrocyte
5
choroid plexus epithelial cell
5
cingulate gyrus
5
colonic mucosa
5
duodenal mucosa
5
effector memory CD8-positive, alpha-beta T cell
5
esophagus
5
esophagus muscularis mucosa
Life stage
2
embryonic
Date released
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
macs
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
month_released!
February, 2021
assembly!
GRCh38
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP