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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
snATAC-seq
Available data
4
bed bed3+
4
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
26
fibroblast
19
endothelial cell
19
pericyte cell
15
macrophage
15
smooth muscle cell
12
excitatory neuron
9
astrocyte
8
T cell
7
type II pneumocyte
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
5
basal cell
5
erythroblast
5
inhibitory neuron
5
keratinocyte
5
pancreatic acinar cell
5
skeletal muscle fiber
4
B cell
4
blood vessel smooth muscle cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
gabaergic neuron
4
glutamatergic neuron
4
luminal epithelial cell of mammary gland
4
mesothelial cell
4
myofibroblast cell
4
pancreatic ductal cell
4
skeletal muscle satellite cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
goblet cell
3
hepatocyte
3
mammary gland epithelial cell
3
mast cell
3
oligodendrocyte precursor cell
3
parietal cell
3
peptic cell
3
schwann cell
3
thyroid follicular cell
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
Muller cell
2
Schwann cell
2
adipocyte
2
alveolar macrophage
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
colon goblet cell
2
eccrine cell
2
endothelial cell of hepatic sinusoid
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
granular cell of epidermis
2
intestinal tuft cell
2
luteal cell
2
mature NK T cell
2
melanocyte
2
memory B cell
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive t cell
2
non keratinizing barrier epithelial cell
2
oligodendrocyte
2
pancreatic A cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
paneth cell
2
plasma cell
2
regular atrial cardiac myocyte
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
stomach neuroendocrine cell
2
stromal cell
2
type B pancreatic cell
2
type I cell of adrenal cortex
2
type I muscle cell
2
type II cell of adrenal cortex
2
type II muscle cell
2
uterine smooth muscle cell
2
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
Satellite Cells, Skeletal Muscle
1
bronchial goblet cell
1
cardiac muscle cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
endothelial cell of artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
gastric goblet cell
1
glial cell
1
granulosa cell
1
hepatic stellate cell
1
hepatoblast
1
islet of Langerhans
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
megakaryocyte
1
metanephros
1
natural killer cell
1
neuroendocrine cell
1
neuron
1
pancreatic endocrine cell
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
sympathetic neuron
1
trophoblast giant cell
1
ureteric bud
Date released
3
November, 2021
1
April, 2020
Software used
3
macs
Lab
32
AMP-T2D consortium
3
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
1
Xin Sun, UCSD
Project
3
ENCODE
1
LungMap
RFA
3
ENCODE3
1
LungMap2
month_released!
February, 2021
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR608YQN
released
Annotation file set
: ATAC-seq peaks in B cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR995HIR
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 3 (NPY+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR143LGZ
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 2 (CXCR5+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR114OHW
released
Annotation file set
: Accessible chromatin annotation of Fetal B Lymphocyte 1 (SPIB+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE