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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
Annotation Category
5
cis-regulatory elements
2
Genetic variant effects
2
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
Available data
4
bed bed3+
2
bigWig
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
102
monocyte
45
heart
41
stomach
40
kidney
38
A549
36
CD8-positive, alpha-beta T cell
36
brain
33
muscle of arm
32
lung
32
neural progenitor cell
31
small intestine
30
muscle of leg
29
adrenal gland
29
placenta
29
retina
27
large intestine
26
common myeloid progenitor, CD34-positive
26
left lung
26
muscle of back
25
B cell
23
right lung
23
thymus
21
hematopoietic multipotent progenitor cell
21
right kidney
20
liver
20
pigmented layer of retina
20
renal pelvis
19
renal cortex interstitium
18
CD4-positive, alpha-beta memory T cell
18
left kidney
17
fibroblast
17
spinal cord
16
endothelial cell
16
heart left ventricle
15
K562
15
T cell
15
hepatocyte
14
CD8-positive, alpha-beta memory T cell
14
adipocyte
14
adipose tissue
14
spleen
13
excitatory neuron
13
macrophage
12
MCF-7
12
endothelial cell of hepatic sinusoid
12
mononuclear cell
12
pericyte cell
12
retinal pigment epithelial cell
11
embryonic stem cell
11
islet of Langerhans
11
regulatory T cell
11
sigmoid colon
11
smooth muscle cell
11
trophoblast cell
10
HepG2
10
astrocyte
10
endothelial cell of umbilical vein
10
fibroblast of cardiac tissue
10
natural killer cell
10
pancreas
10
tibial nerve
9
T-helper 1 cell
9
caudate nucleus
9
erythroblast
9
fibroblast of lung
9
foreskin keratinocyte
9
gastrocnemius medialis
9
heart right ventricle
9
ovary
9
psoas muscle
9
thyroid gland
9
transverse colon
8
CD14-positive monocyte
8
EndoC_BH1
8
T-helper 17 cell
8
T-helper 2 cell
8
body of pancreas
8
chorionic villus
8
coronary artery
8
endocrine pancreas
8
left cardiac atrium
8
mammary gland epithelial cell
8
mesenchymal stem cell
8
muscle of trunk
8
pancreatic beta cell
8
pancreatic ductal cell
8
skeletal muscle myoblast
8
skeletal muscle satellite cell
8
tibial artery
7
HeLa-S3
7
Peyer's patch
7
chorion membrane
7
fibroblast of dermis
7
foreskin fibroblast
7
keratinocyte
7
layer of hippocampus
7
mature neutrophil
7
osteoblast
7
pancreatic acinar cell
7
pancreatic alpha cell
7
right atrium auricular region
7
skin fibroblast
7
temporal lobe
7
testis
7
upper lobe of left lung
6
SGBS preadipocytes
6
angular gyrus
6
aorta
6
ascending aorta
6
endometrium adenocarcinoma
6
frontal cortex
6
glutamatergic neuron
6
immortal human breast epithelial cell line cell
6
kidney tubule cell
6
naive T cell
6
neurosphere
6
omental fat pad
6
skeletal muscle tissue
6
thoracic aorta
5
CD14-positive, CD16-negative classical monocyte
5
GM12878
5
H1-hESC
5
NAMALWA cell
5
SK-N-DZ
5
SK-N-SH
5
breast epithelium
5
bronchial epithelial cell
5
cardiac muscle cell
5
cerebellum
5
chondrocyte
5
choroid plexus epithelial cell
5
cingulate gyrus
5
colon epithelial cell
5
colonic mucosa
5
duodenal mucosa
5
epithelial cell of prostate
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
eye
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
inhibitory neuron
5
left renal cortex interstitium
5
left renal pelvis
5
limb
5
mucosa of rectum
5
pancreatic delta cell
5
prostate gland
5
right renal cortex interstitium
5
right renal pelvis
5
skeletal muscle fiber
5
stomach smooth muscle
5
substantia nigra
5
tongue
5
trophoblast
5
urinary bladder
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
Ammon's horn
4
BE(2)-C
4
BJ cell
4
Brodmann (1909) area 46
4
CD4-positive, alpha-beta T cell
4
Caco-2 cell
4
GM06990
4
GM12864
4
GM12865
4
GM19240
4
HEK293
4
HL-60
4
IMR-90
4
KARPAS-422 cell
4
LNCaP clone FGC
4
NT2-D1 cell
4
SK-N-MC
4
T47D
4
WERI-Rb-1
4
alternatively activated macrophage
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
epithelial cell of proximal tubule
4
esophagus
4
fibroblast of breast
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
globus pallidus
4
glomerular endothelial cell
4
kidney glomerular epithelial cell
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
medulla oblongata
4
memory B cell
4
midbrain
4
muscle cell
Life stage
2
embryonic
Date released
February, 2021
2
January, 2020
2
September, 2022
1
October, 2022
Software used
2
chromhmm
2
macs
1
r
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
February, 2021
Showing 5 of 5 results
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Download
FileSet
DSR073XYT
released
Annotation file set
: Binding sites annotation for cardiac muscle cell (HCM) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR733XNI
released
Annotation file set
: Candidate regulatory elements for BSS00171 cardiac muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR313BZF
released
Annotation file set
: Chromatin states for BSS00171 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR433FIX
released
Annotation file set
: Accessible chromatin annotation of heart cardiac muscle cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR433PLX
released
Annotation file set
: Cardiomyocytes (cardiac muscle cell) accessible chromatin annotation
Lab:
AMP-T2D consortium
Project:
AMP