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Schema
Citing CMDGA
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Annotation type
1
gene expression
1
target gene predictions
Annotation Category
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
1
RNA-seq
1
pCHi-C
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
primary cell
Biosample term
55
HeLa-S3
47
H1-hESC
26
monocyte
25
islet of Langerhans
24
heart
23
K562
23
stomach
20
brain
20
liver
19
A549
19
CD14-positive monocyte
19
HFFc6
19
adrenal gland
19
lung
18
small intestine
17
muscle of arm
16
macrophage
16
placenta
15
kidney
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
14
thymus
13
EndoC_BH1
13
adipose tissue
13
left lung
13
muscle of back
13
pancreatic ductal cell
13
regulatory T cell
12
B cell
12
body of pancreas
12
coronary artery
12
endothelial cell
12
fibroblast
12
neural progenitor cell
12
subcutaneous adipose tissue
12
tibial nerve
11
T-helper 1 cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
hepatocyte
11
pancreatic delta cell
11
right atrium auricular region
11
right kidney
11
right lung
10
T-helper 17 cell
10
caudate nucleus
10
frontal cortex
10
pancreatic acinar cell
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
10
smooth muscle cell
10
spleen
10
tibial artery
9
CD4-positive, alpha-beta memory T cell
9
cerebellum
9
extended pluripotent stem (EPS) cells
9
left kidney
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
omental fat pad
9
pancreatic beta cell
9
progenitor cell of endocrine pancreas
9
putamen
9
spinal cord
9
substantia nigra
8
GM12878
8
H9
8
T cell
8
induced pluripotent stem cell
8
ovary
8
pancreatic alpha cell
8
psoas muscle
7
Ammon's horn
7
CD8-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
adipocyte
7
ascending aorta
7
heart right ventricle
7
lymphocyte
7
pancreas
7
sigmoid colon
7
trophoblast cell
6
MCF-7
6
amygdala
6
anterior cingulate cortex
6
cardiomyocytes (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
dendritic cell
6
hypothalamus
6
iPSC derived cell line
6
keratinocyte
6
lymphoblastoid cell line
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
natural killer cell
6
nucleus accumbens
6
olfactory receptor cell
6
pancreatic stellate cell
6
retina
6
right lobe of liver
6
thyroid gland
6
transverse colon
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
aorta
5
astrocyte
5
endothelial cell of umbilical vein
5
gastrocnemius medialis
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
mammary gland epithelial cell
5
memory B cell
5
muscle of trunk
5
skeletal muscle myoblast
5
skeletal muscle tissue
5
testis
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
cardiac muscle cell
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
esophagus
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
layer of hippocampus
4
mesenchymal stem cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
skin of body
4
uterus
Date released
1
March, 2020
1
May, 2021
Software used
1
nospecificsoft_customcode
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
month_released!
February, 2021
award.rfa!
AMP2
annotation_category!
cis-regulatory elements
Showing 2 of 2 results
table-tab-icon
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Download
FileSet
DSR740DPX
released
Annotation file set
: Gene expression annotation of embryonic stem cell Undifferentiated ES cell from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP