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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
chromatin state
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
1
Gene expression levels
1
Target gene links
Annotation type Category
3
snATAC-seq
1
ChIP-seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
5
bed bed3+
1
bed bed9
1
bigBed bed9
1
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
in vitro differentiated cells
6
primary cell
1
stem cell
Biosample term
128
monocyte
69
heart
64
stomach
62
HeLa-S3
57
A549
56
brain
56
kidney
52
H1-hESC
51
lung
50
muscle of arm
49
small intestine
48
adrenal gland
45
placenta
44
muscle of leg
43
CD8-positive, alpha-beta T cell
41
large intestine
40
common myeloid progenitor, CD34-positive
40
liver
39
left lung
39
muscle of back
38
K562
37
thymus
36
islet of Langerhans
35
B cell
35
retina
34
right lung
33
endothelial cell
32
right kidney
30
macrophage
30
renal pelvis
29
fibroblast
29
renal cortex interstitium
28
hepatocyte
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
adipose tissue
27
heart left ventricle
27
left kidney
26
spinal cord
24
regulatory T cell
24
spleen
22
T cell
22
pericyte cell
22
tibial nerve
21
CD8-positive, alpha-beta memory T cell
21
EndoC_BH1
20
T-helper 1 cell
20
body of pancreas
20
pigmented layer of retina
20
smooth muscle cell
19
HFFc6
19
T-helper 17 cell
19
coronary artery
18
MCF-7
18
caudate nucleus
18
right atrium auricular region
17
mononuclear cell
17
pancreas
17
pancreatic beta cell
17
pancreatic ductal cell
17
psoas muscle
17
sigmoid colon
17
tibial artery
16
endothelial cell of hepatic sinusoid
16
heart right ventricle
16
ovary
15
T-helper 2 cell
15
astrocyte
15
frontal cortex
15
natural killer cell
15
pancreatic acinar cell
15
pancreatic delta cell
15
subcutaneous adipose tissue
15
thyroid gland
14
endothelial cell of umbilical vein
14
pancreatic alpha cell
14
trophoblast cell
13
GM12878
13
HepG2
13
ascending aorta
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
gastrocnemius medialis
13
neutrophil
13
omental fat pad
13
substantia nigra
13
transverse colon
12
cerebellum
12
endocrine pancreas
12
muscle of trunk
12
skeletal muscle satellite cell
11
Ammon's horn
11
aorta
11
chorionic villus
11
erythroblast
11
excitatory neuron
11
fibroblast of dermis
11
foreskin keratinocyte
11
keratinocyte
11
mammary gland epithelial cell
11
putamen
11
testis
10
H9
10
Peyer's patch
10
foreskin fibroblast
10
left cardiac atrium
10
pancreatic stellate cell
10
skeletal muscle myoblast
10
skeletal muscle tissue
9
colon epithelial cell
9
kidney tubule cell
9
layer of hippocampus
9
osteoblast
9
upper lobe of left lung
8
SK-N-SH
8
angular gyrus
8
breast epithelium
8
chorion membrane
8
immortal human breast epithelial cell line cell
8
lymphocyte
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
temporal lobe
8
thoracic aorta
8
trophoblast
7
CD4-positive, alpha-beta T cell
7
NAMALWA cell
7
SK-N-DZ
7
cingulate gyrus
7
endometrium adenocarcinoma
7
esophagus
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
glomerular endothelial cell
7
hepatic stellate cell
7
limb
7
lymphoblastoid cell line
7
memory B cell
7
naive thymus-derived CD4-positive, alpha-beta T cell
7
skin fibroblast
6
22Rv1
6
Brodmann (1909) area 46
6
GM19240
6
IMR-90
6
KARPAS-422 cell
6
LNCaP clone FGC
6
T47D
6
alternatively activated macrophage
6
amygdala
6
anterior cingulate cortex
6
bronchial epithelial cell
6
colonic mucosa
6
glomerular visceral epithelial cell
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
left renal cortex interstitium
6
left renal pelvis
6
mucosa of rectum
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
right lobe of liver
6
right renal pelvis
6
tongue
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
Organ
7
connective tissue
Life stage
1
adult
1
unknown
Date released
3
February, 2024
February, 2021
1
March, 2020
1
May, 2022
1
October, 2019
1
October, 2022
Software used
2
macs
1
chromhmm
1
deeptools
1
eigenmt
1
nospecificsoft_customcode
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
4
Stephen Parker, UMich
3
AMP-T2D consortium
Project
7
AMP
RFA
4
AMP2
3
AMP
month_released!
February, 2021
biosample_type!
in vitro differentiated cells
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR033HJN
released
Annotation file set
: Expression QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR543XVO
released
Annotation file set
: Cell type gene expression mean TPM and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP