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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
113
monocyte
67
heart
63
stomach
62
HeLa-S3
57
A549
56
kidney
55
brain
50
lung
50
muscle of arm
49
small intestine
47
adrenal gland
45
placenta
44
H1-hESC
44
muscle of leg
41
CD8-positive, alpha-beta T cell
41
large intestine
40
common myeloid progenitor, CD34-positive
39
left lung
39
muscle of back
38
K562
38
liver
37
neural progenitor cell
37
thymus
35
B cell
34
right lung
33
retina
32
right kidney
31
hematopoietic multipotent progenitor cell
31
islet of Langerhans
30
renal pelvis
29
endothelial cell
29
fibroblast
29
renal cortex interstitium
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
adipose tissue
27
left kidney
27
macrophage
26
heart left ventricle
26
spinal cord
25
hepatocyte
23
T cell
23
smooth muscle cell
23
spleen
22
adipocyte
22
pericyte cell
21
CD8-positive, alpha-beta memory T cell
20
pigmented layer of retina
19
HFFc6
18
MCF-7
18
trophoblast cell
17
mononuclear cell
17
pancreas
17
psoas muscle
17
regulatory T cell
17
sigmoid colon
16
tibial nerve
15
coronary artery
15
endothelial cell of umbilical vein
15
heart right ventricle
15
mesenchymal stem cell
15
natural killer cell
15
ovary
15
thyroid gland
14
astrocyte
14
body of pancreas
14
caudate nucleus
13
GM12878
13
HepG2
13
T-helper 1 cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
foreskin keratinocyte
13
gastrocnemius medialis
13
neutrophil
13
pancreatic ductal cell
13
transverse colon
12
EndoC_BH1
12
T-helper 17 cell
12
T-helper 2 cell
12
chorionic villus
12
embryonic stem cell
12
endocrine pancreas
12
endothelial cell of hepatic sinusoid
12
mammary gland epithelial cell
12
muscle of trunk
12
pancreatic acinar cell
12
pancreatic beta cell
12
retinal pigment epithelial cell
12
right atrium auricular region
12
skeletal muscle satellite cell
12
tibial artery
11
erythroblast
11
fibroblast of dermis
11
keratinocyte
11
pancreatic delta cell
11
skeletal muscle myoblast
10
H9
10
Peyer's patch
10
aorta
10
chorion membrane
10
foreskin fibroblast
10
testis
9
ascending aorta
9
cardiac muscle cell
9
colon epithelial cell
9
endometrium adenocarcinoma
9
frontal cortex
9
kidney tubule cell
9
layer of hippocampus
9
skeletal muscle tissue
9
skin fibroblast
9
upper lobe of left lung
8
SK-N-SH
8
angular gyrus
8
breast epithelium
8
cerebellum
8
epithelial cell of prostate
8
esophagus
8
esophagus muscularis mucosa
8
immortal human breast epithelial cell line cell
8
left cardiac atrium
8
lymphocyte
8
naive T cell
8
pancreatic alpha cell
8
pituitary stalk
8
putamen
8
skeletal muscle fiber
8
thoracic aorta
8
trophoblast
7
CD4-positive, alpha-beta T cell
7
NAMALWA cell
7
SK-N-DZ
7
bronchial epithelial cell
7
choroid plexus epithelial cell
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
epithelial cell of proximal tubule
7
esophagus squamous epithelium
7
eye
7
glomerular endothelial cell
7
glomerular visceral epithelial cell
7
glutamatergic neuron
7
hepatic stellate cell
7
limb
7
lymphoblastoid cell line
7
omental fat pad
7
osteoblast
6
22Rv1
6
Ammon's horn
6
Brodmann (1909) area 46
6
CD4-positive helper T cell
6
GM19240
6
IMR-90
6
KARPAS-422 cell
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
cortical cell of adrenal gland
6
dendritic cell
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
endodermal cell
6
enterocyte
6
fibroblast of breast
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
left renal cortex interstitium
6
left renal pelvis
6
mucosa of rectum
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neurosphere
6
right renal pelvis
6
subcutaneous adipose tissue
6
temporal lobe
6
tongue
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
GM19238
5
GM19239
5
H7-hESC
5
HAP-1
5
HCT116
5
HEK293
5
HL-60
Life stage
3
embryonic
Date released
February, 2021
3
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
month_released!
February, 2021
files.file_type!
tsv
Showing 6 of 6 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP