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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
variant allelic effects
1
accessible chromatin
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
3
snATAC-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
112
monocyte
40
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
33
B cell
29
fibroblast
28
endothelial cell
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
26
macrophage
22
T cell
22
hepatocyte
22
pericyte cell
21
CD8-positive, alpha-beta memory T cell
20
smooth muscle cell
18
mononuclear cell
17
regulatory T cell
15
endothelial cell of umbilical vein
15
natural killer cell
14
astrocyte
14
trophoblast cell
13
T-helper 1 cell
13
fibroblast of lung
13
keratinocyte
13
neutrophil
12
T-helper 17 cell
12
T-helper 2 cell
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of cardiac tissue
12
foreskin keratinocyte
12
mammary gland epithelial cell
12
pancreatic beta cell
12
skeletal muscle myoblast
12
skeletal muscle satellite cell
11
erythroblast
11
fibroblast of dermis
11
pancreatic acinar cell
11
pancreatic delta cell
11
pancreatic ductal cell
10
pancreatic alpha cell
9
kidney tubule cell
9
naive T cell
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neurosphere
9
osteoblast
9
skeletal muscle fiber
9
skin fibroblast
8
glutamatergic neuron
7
CD4-positive, alpha-beta T cell
7
bronchial epithelial cell
7
epithelial cell of prostate
7
epithelial cell of proximal tubule
7
foreskin fibroblast
7
glomerular endothelial cell
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
luminal epithelial cell of mammary gland
7
mature neutrophil
7
renal cortical epithelial cell
7
retinal pigment epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
fibroblast of breast
6
glomerular visceral epithelial cell
6
kidney epithelial cell
6
memory B cell
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
alternatively activated macrophage
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
cardiac muscle cell
5
epithelial cell of esophagus
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
gabaergic neuron
5
inhibitory neuron
5
kidney capillary endothelial cell
5
naive B cell
5
pancreatic polypeptide-secreting cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
CD1c-positive myeloid dendritic cell
4
activated CD4-positive, alpha-beta T cell
4
adipocyte
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
inflammatory macrophage
4
iris pigment epithelial cell
4
mammary epithelial cell
4
megakaryocyte
4
mesothelial cell
4
myofibroblast cell
4
non-pigmented ciliary epithelial cell
4
pancreatic stellate cell
4
pulmonary artery endothelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
T follicular helper cell
3
activated CD8-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic endothelial cell
3
astrocyte of the spinal cord
3
blood cell
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epidermal melanocyte
3
epithelial cell of amnion
3
fibroblast of gingiva
3
fibroblast of the conjunctiva
3
foreskin melanocyte
3
glial cell
3
goblet cell
3
leukocyte
3
lung microvascular endothelial cell
3
mammary stem cell
3
mast cell
3
mesangial cell
3
microglial cell
3
naive t cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
parietal cell
3
peptic cell
3
plasma cell
3
plasmacytoid dendritic cell
3
regular cardiac myocyte
3
schwann cell
3
smooth muscle cell of the coronary artery
3
stromal cell of bone marrow
3
thyroid follicular cell
3
type B pancreatic cell
2
Muller cell
2
Schwann cell
2
T-cell
2
acute myeloid leukemia cell
2
alveolar macrophage
2
aortic adventitial fibroblast
2
basal cell of epidermis
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
colon goblet cell
2
conventional dendritic cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
extracellular matrix secreting cell
2
fat cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
granular cell of epidermis
2
intestinal tuft cell
2
luteal cell
2
mature NK T cell
2
mature natural killer cell
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
myoepithelial cell
2
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
neuron
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
paneth cell
2
regular atrial cardiac myocyte
2
renal epithelial cell
2
respiratory goblet cell
2
skeletal muscle fibroblast
2
small intestine goblet cell
Organ
3
epithelium
Date released
2
February, 2024
1
November, 2021
Software used
2
deltasvm
1
macs
Lab
3
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
month_released!
February, 2021
files.file_type!
tsv
Showing 3 of 3 results
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Download
FileSet
DSR657LBX
released
Annotation file set
: Accessible chromatin annotation of Fetal Goblet Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR276IOG
released
Annotation file set
: Variant allelic effects annotation of Goblet cells from snATAC (sub-type2) from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR809GFE
released
Annotation file set
: Variant allelic effects annotation of Goblet cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP