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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
107
monocyte
59
HeLa-S3
46
heart
43
H1-hESC
43
stomach
40
CD8-positive, alpha-beta T cell
40
kidney
39
A549
35
brain
34
muscle of arm
33
lung
33
small intestine
32
K562
32
adrenal gland
32
neural progenitor cell
30
placenta
30
retina
29
muscle of leg
28
endothelial cell
28
large intestine
27
B cell
27
common myeloid progenitor, CD34-positive
27
fibroblast
26
left lung
26
muscle of back
26
thymus
23
CD14-positive monocyte
23
liver
23
right lung
21
hematopoietic multipotent progenitor cell
21
macrophage
21
pericyte cell
21
renal pelvis
21
right kidney
21
smooth muscle cell
20
pigmented layer of retina
20
renal cortex interstitium
19
HFFc6
19
adipocyte
19
hepatocyte
18
CD4-positive, alpha-beta memory T cell
18
adipose tissue
18
left kidney
18
spinal cord
17
T cell
17
heart left ventricle
16
spleen
15
islet of Langerhans
14
CD8-positive, alpha-beta memory T cell
14
pancreas
13
MCF-7
13
astrocyte
13
excitatory neuron
13
sigmoid colon
12
GM12878
12
HepG2
12
endothelial cell of hepatic sinusoid
12
mononuclear cell
12
natural killer cell
12
retinal pigment epithelial cell
12
trophoblast cell
11
coronary artery
11
fibroblast of cardiac tissue
11
keratinocyte
11
mesenchymal stem cell
11
ovary
11
pancreatic beta cell
11
pancreatic ductal cell
11
psoas muscle
11
regulatory T cell
10
EndoC_BH1
10
body of pancreas
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
gastrocnemius medialis
10
heart right ventricle
10
mammary gland epithelial cell
10
pancreatic acinar cell
10
pancreatic delta cell
10
thyroid gland
10
tibial nerve
10
transverse colon
9
H9
9
T-helper 1 cell
9
caudate nucleus
9
erythroblast
9
foreskin keratinocyte
9
left cardiac atrium
9
muscle of trunk
9
pituitary stalk
9
tibial artery
8
T-helper 17 cell
8
T-helper 2 cell
8
cardiac muscle cell
8
chorionic villus
8
colon epithelial cell
8
endocrine pancreas
8
fibroblast of dermis
8
foreskin fibroblast
8
glutamatergic neuron
8
lymphocyte
8
pancreatic alpha cell
8
right atrium auricular region
8
skeletal muscle myoblast
8
skeletal muscle satellite cell
8
skin fibroblast
7
Peyer's patch
7
chorion membrane
7
frontal cortex
7
layer of hippocampus
7
osteoblast
6
CD4-positive helper T cell
6
SGBS preadipocytes
6
SK-N-SH
6
aorta
6
ascending aorta
6
breast epithelium
6
choroid plexus epithelial cell
6
cortical cell of adrenal gland
6
dendritic cell
6
embryonic stem cell
6
endometrium adenocarcinoma
6
enterocyte
6
epithelial cell of prostate
6
glomerular visceral epithelial cell
6
immortal human breast epithelial cell line cell
6
kidney tubule cell
6
left renal pelvis
6
luminal epithelial cell of mammary gland
6
memory B cell
6
naive T cell
6
neutrophil
6
right renal pelvis
6
skeletal muscle fiber
6
trophoblast
6
upper lobe of left lung
5
cardiac fibroblast
5
Ammon's horn
5
GM19240
5
HUES8
5
IMR-90
5
NAMALWA cell
5
SK-N-DZ
5
basal cell
5
bronchial epithelial cell
5
cerebellum
5
chondrocyte
5
cingulate gyrus
5
colonic mucosa
5
duodenal mucosa
5
epithelial cell of proximal tubule
5
esophagus
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
eye
5
gabaergic neuron
5
hepatic stellate cell
5
inhibitory neuron
5
left renal cortex interstitium
5
limb
5
mesendoderm
5
mucosa of rectum
5
naive B cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
neurosphere
5
omental fat pad
5
right renal cortex interstitium
5
testis
5
type I muscle cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
Brodmann (1909) area 46
4
CD4-positive, alpha-beta T cell
4
Caco-2 cell
4
CyT49
4
GM06990
4
GM12864
4
GM12865
4
GM18507
4
GM19238
4
GM19239
4
H7-hESC
4
HAP-1
4
HCT116
4
HEK293
4
HL-60
4
HT-29
4
KARPAS-422 cell
4
LNCaP clone FGC
4
LoVo cell
4
MM.1S
4
NT2-D1 cell
4
OCI-LY7
Life stage
2
adult
Date released
February, 2021
2
September, 2022
1
June, 2020
1
October, 2022
Software used
2
r
1
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
February, 2021
Showing 4 of 4 results
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Download
FileSet
DSR526ACK
released
Annotation file set
: Binding sites annotation for AG09309 cell (AG09309) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR051TBF
released
Annotation file set
: Candidate regulatory elements for BSS00066 AG09309 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR166XOE
released
Annotation file set
: Target gene predictions for BSS00066 AG09309 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702GBN
released
Annotation file set
: Accessible chromatin annotation for Epidermis AG09309 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP