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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
binding sites
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
DNase-seq
1
ATAC-seq
1
ChIP-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
128
monocyte
53
HeLa-S3
49
H1-hESC
44
CD8-positive, alpha-beta T cell
35
islet of Langerhans
34
endothelial cell
32
neural progenitor cell
30
macrophage
29
fibroblast
25
hepatocyte
24
retina
21
EndoC_BH1
21
pancreatic ductal cell
21
smooth muscle cell
20
K562
20
pigmented layer of retina
19
HFFc6
19
pericyte cell
18
liver
17
pancreatic acinar cell
16
adipocyte
16
endothelial cell of hepatic sinusoid
16
pancreatic beta cell
15
CD14-positive monocyte
15
regulatory T cell
14
excitatory neuron
14
kidney
14
pancreatic alpha cell
14
pancreatic delta cell
13
B cell
13
coronary artery
13
embryonic stem cell
13
subcutaneous adipose tissue
12
astrocyte
11
T cell
11
T-helper 1 cell
11
erythroblast
11
heart
11
heart left ventricle
11
pancreas
10
GM12878
10
T-helper 17 cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
pancreatic stellate cell
10
pituitary stalk
10
retinal pigment epithelial cell
10
right atrium auricular region
10
tibial artery
9
adipose tissue
9
caudate nucleus
9
endothelial cell of umbilical vein
9
extended pluripotent stem (EPS) cells
9
memory B cell
9
mesenchymal stem cell
9
naive thymus-derived CD8-positive, alpha-beta T cell
9
progenitor cell of endocrine pancreas
9
putamen
8
frontal cortex
8
glutamatergic neuron
8
induced pluripotent stem cell
8
left cardiac atrium
8
natural killer cell
8
skeletal muscle fiber
8
skeletal muscle satellite cell
8
tibial nerve
7
Ammon's horn
7
CD4-positive, alpha-beta T cell
7
H9
7
brain
7
dendritic cell
7
heart right ventricle
7
keratinocyte
7
lymphoblastoid cell line
7
mature neutrophil
7
neutrophil
7
omental fat pad
7
osteoblast
7
substantia nigra
7
type I muscle cell
6
CD4-positive helper T cell
6
HepG2
6
SGBS preadipocytes
6
T-helper 2 cell
6
adrenal gland
6
alternatively activated macrophage
6
ascending aorta
6
body of pancreas
6
cardiac muscle cell
6
cardiomyocytes (cardiac muscle cell)
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
iPSC derived cell line
6
lymphocyte
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
skeletal muscle myoblast
6
stomach
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
T follicular helper cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
amygdala
5
anterior cingulate cortex
5
aorta
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
cerebellum
5
cerebellum (Hemisphere)
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
fibroblast of cardiac tissue
5
gabaergic neuron
5
hypothalamus
5
inflammatory macrophage
5
inhibitory neuron
5
muscle of leg
5
nucleus accumbens
5
ovary
5
pancreatic endothelial cell
5
psoas muscle
5
spleen
4
C1 segment of cervical spinal cord
4
CyT49
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Schwann cell
4
activated CD4-positive, alpha-beta T cell
4
blood vessel smooth muscle cell
4
cartilage tissue
4
choroid plexus epithelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
epithelial cell of proximal tubule
4
fibroblast of lung
4
foreskin fibroblast
4
gamma-delta T cell
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
luminal epithelial cell of mammary gland
4
mammary epithelial cell
Organ
3
lung
Date released
September, 2022
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
1
abc
1
chromhmm
1
macs
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
month_released!
February, 2021
February, 2020
September, 2022
Showing 3 of 3 results
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008HJP
released
Annotation file set
: Accessible chromatin annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP