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Citing CMDGA
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Annotation type
1
accessible chromatin
Annotation Category
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
1
Homo sapiens
Biosample type
1
primary cell
Biosample term
1
CD4-positive helper T cell
Date released
1
February, 2024
Software used
2166
r
1017
chromhmm
941
macs
246
abc
131
deltasvm
121
deseq2
114
qTLtools
30
cicero
26
chicago
26
nospecificsoft_customcode
25
seurat
23
gtex_eqtl:V8
23
gtex_finemapping_eQTL:caveman
23
gtex_finemapping_eQTL:caviar
23
gtex_finemapping_eQTL:dapg
18
samtools
15
limix
14
matrix-eQTL
13
hiccups
12
deeptools
12
umitools
10
rasqual
6
fastqtl
5
eigenmt
5
peer
4
unknown
3
minfi
3
sqtlseeker
2
combined S2G strategy
2
mach2qtl
2
mpraflow
1
bedops
1
betacells_cytokines_t1d
1
emmax
1
encode-ccres
1
epacts
1
fast-lmm
1
pepatac
1
probabel
1
spp
Lab
1
Stephen S. Rich Lab @UVA
Project
1
T1D
RFA
1
T1D
month_released!
February, 2021
organ_slims!
liver
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Download
FileSet
DSR204EGG
released
Annotation file set
: A canonical set of CD4+ T cell peaks
Lab:
Stephen S. Rich Lab @UVA
Project:
T1D