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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
snATAC-seq
Available data
3
bed bed3+
1
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
Biosample term
52
H1-hESC
18
trophoblast cell
12
chorionic villus
10
H9
8
trophoblast
6
endodermal cell
5
H7-hESC
5
HUES8
4
CyT49
4
H4
4
HUES6
4
embryonic facial prominence
3
ELF-1
3
ES-I3
3
HUES48
3
HUES64
3
UCSF-4
3
cardiac mesoderm primordium
3
ectodermal cell
3
mesodermal cell
1
hESC H9
1
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
placental hematopoietic stem cell
1
primordial germ cell
1
trophoblast giant cell
Organ
4
embryo
1
extraembryonic component
Life stage
3
embryonic
Date released
3
September, 2022
February, 2021
1
November, 2021
Software used
2
r
1
chromhmm
1
macs
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
month_released!
February, 2021
Showing 4 of 4 results
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Download
FileSet
DSR271EXL
released
Annotation file set
: Candidate regulatory elements for BSS00273 ectodermal cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR203UHP
released
Annotation file set
: Target gene predictions for BSS00273 ectodermal cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR957XUP
released
Annotation file set
: Chromatin states for BSS00273 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR806IKQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Syncitiotrophoblast,Cytotrophoblast,Trophoblast Giant from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE