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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
gene expression
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
2
Gene expression levels
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
RNA-seq
1
scRNA-seq
Available data
5
bed bed3+
1
bed bed9
1
bigWig
1
tsv
1
txt
File set status
8
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
56
kidney
32
right kidney
30
renal pelvis
29
renal cortex interstitium
27
left kidney
9
kidney tubule cell
8
epithelial cell of proximal tubule
8
glomerular endothelial cell
8
glomerular visceral epithelial cell
8
left renal cortex interstitium
8
left renal pelvis
8
right renal cortex interstitium
8
right renal pelvis
7
kidney glomerular epithelial cell
7
renal cortical epithelial cell
6
kidney epithelial cell
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Connecting Tubule Cell
5
Cortical Thick Ascending Limb Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Glomerular Capillary Endothelial Cell
5
HEK293
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Medullary Thick Ascending Limb Cell
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Renin-positive Juxtaglomerular Granular Cell
5
kidney capillary endothelial cell
4
ACHN
4
Caki2
4
RCC 7860
4
renal cell carcinoma
3
G401
3
HEK293T
2
cortex of kidney
2
kidney distal convoluted tubule epithelial cell
2
metanephros
2
renal principal cell
1
left kidney
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular epithelium
1
kidney - cortex
1
kidney - medulla
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
nephron tubule
1
parietal epithelial cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal cortex tubule
1
renal glomerulus
1
renal intercalated cell
1
ureteric bud
Organ
8
epithelium
8
kidney
Life stage
3
unknown
2
adult
Date released
February, 2021
3
September, 2022
1
August, 2021
1
February, 2020
1
January, 2020
1
May, 2020
1
October, 2022
Software used
4
r
2
chromhmm
1
deltasvm
1
macs
1
seurat
Lab
7
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
8
AMP
RFA
7
AMP
1
AMP2
month_released!
February, 2021
Showing 8 of 8 results
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Download
FileSet
DSR081IKY
released
Annotation file set
: Binding sites annotation for epithelial cell of proximal tubule (RPTEC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR691IGQ
released
Annotation file set
: Candidate regulatory elements for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR412AJP
released
Annotation file set
: Target gene predictions for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR129CVZ
released
Annotation file set
: Chromatin states for BSS00310 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR066QTW
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for epithelial cell of proximal tubule
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR347BGE
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney epithelial cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR777QPD
released
Annotation file set
: Gene expression levels of Kidney epithelial cell of proximal tubule from RNA-seq (ENCODE)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR184YBQ
released
Annotation file set
: Accessible chromatin annotation of kidney epithelial cell of proximal tubule from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP