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Schema
Citing CMDGA
Clear Filters
Annotation type
2
hQTL
1
eQTL
1
meQTL
1
sQTL
Annotation Category
5
Genetic variant effects
Annotation type Category
2
ChIP-seq
2
RNA-seq
1
DNA methylation profiling by array assay
Available data
2
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
102
monocyte
54
A549
30
common myeloid progenitor, CD34-positive
27
hematopoietic multipotent progenitor cell
23
retina
21
liver
20
adipose tissue
20
pigmented layer of retina
19
B cell
19
adrenal gland
18
K562
18
body of pancreas
18
tibial nerve
16
caudate nucleus
16
islet of Langerhans
16
stomach
15
CD8-positive, alpha-beta memory T cell
15
MCF-7
15
hepatocyte
15
mononuclear cell
15
omental fat pad
14
endothelial cell of hepatic sinusoid
13
CD8-positive, alpha-beta T cell
13
coronary artery
13
right atrium auricular region
13
spleen
13
tibial artery
12
ascending aorta
12
cerebellum
12
frontal cortex
12
gastrocnemius medialis
12
heart left ventricle
12
sigmoid colon
12
thyroid gland
12
transverse colon
11
pancreas
11
regulatory T cell
11
subcutaneous adipose tissue
11
substantia nigra
10
T cell
10
T-helper 1 cell
10
natural killer cell
10
ovary
10
psoas muscle
10
putamen
9
Ammon's horn
9
CD14-positive monocyte
9
CD4-positive, alpha-beta memory T cell
9
HeLa-S3
9
Peyer's patch
9
aorta
9
endocrine pancreas
9
endometrium adenocarcinoma
9
immortal human breast epithelial cell line cell
9
layer of hippocampus
9
upper lobe of left lung
8
angular gyrus
8
kidney tubule cell
8
right lobe of liver
8
temporal lobe
7
kidney
7
testis
7
thoracic aorta
7
vagina
6
Brodmann (1909) area 46
6
LNCaP clone FGC
6
T-helper 2 cell
6
T47D
6
breast epithelium
6
cingulate gyrus
6
colonic mucosa
6
duodenal mucosa
6
endothelial cell
6
esophagus
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
fibroblast of breast
6
kidney glomerular epithelial cell
6
lower leg skin
6
mammary gland epithelial cell
6
mucosa of rectum
6
muscle cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
parathyroid adenoma
6
prostate gland
6
skeletal muscle tissue
6
small intestine
6
stomach smooth muscle
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
amygdala
5
anterior cingulate cortex
5
cerebellum (Hemisphere)
5
gastrocnemius medialis(Muscle - Skeletal)
5
globus pallidus
5
hepatic stellate cell
5
hypothalamus
5
left ventricle myocardium
5
mature neutrophil
5
medulla oblongata
5
midbrain
5
middle frontal gyrus
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
5
nucleus accumbens
5
pons
5
right cardiac atrium
5
skeletal muscle satellite cell
5
superior temporal gyrus
4
GM12878
4
T-helper 17 cell
4
cartilage tissue
4
cerebellar cortex
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
glutamatergic neuron
4
heart
4
heart right ventricle
4
inflammatory macrophage
4
lung
4
mesenchymal stem cell
4
occipital lobe
4
pancreatic beta cell
4
pancreatic delta cell
4
skeletal muscle myoblast
4
uterus
3
8988T
3
A172
3
ACC112
3
ACHN
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
C4-2B
3
CD4-positive, alpha-beta T cell
3
COLO829
3
Caco-2 cell
3
Caki2
3
Cycling Mononuclear Phagocyte
3
DOHH2
3
GM04503
Life stage
6
unknown
5
adult
Date released
5
May, 2021
Software used
5
limix
2
macs
1
minfi
1
sqtlseeker
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
February, 2021
Showing 5 of 5 results
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Download
FileSet
DSR661WZX
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR197ERC
released
Annotation file set
: methylation quantitative trait loci (meQTLs) from DAN methylation of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR804HBZ
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K4me1 ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR676ZHI
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR792EUZ
released
Annotation file set
: expression quantitative trait loci (eQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD16+ neutrophils) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP