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Schema
Citing CMDGA
Clear Filters
Annotation type
6
chromatin state
6
target gene predictions
4
accessible chromatin
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
2
Gene expression levels
Annotation type Category
2
ATAC-seq
1
DNase-seq
1
RNA-seq
1
snATAC-seq
1
snRNA-seq
Available data
6
bed bed3+
bigWig
1
tsv
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
primary cell
Biosample term
17
monocyte
17
neural progenitor cell
16
epithelial cell of proximal tubule
15
EndoC_BH1
15
glomerular endothelial cell
12
endothelial cell
12
islet of Langerhans
11
cardiomyocytes
9
H1-hESC
9
extended pluripotent stem (EPS) cells
9
hepatocyte
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
regulatory T cell
8
T-helper 1 cell
8
kidney
8
retina
7
T-helper 17 cell
7
embryonic stem cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
pancreatic ductal cell
7
pigmented layer of retina
6
adipocyte
6
glomerular visceral epithelial cell
6
kidney interstitial cell
5
chondrocyte
5
heart
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mesangial cell
5
retinal pigment epithelial cell
4
B cell
4
CD8-positive, alpha-beta T cell
4
SGBS preadipocytes
4
adipose tissue
4
bone tissue
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
endothelial cell of hepatic sinusoid
4
gamma-delta T cell
4
glutamatergic neuron
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
macrophage
4
nephron progenitor
4
osteoblast
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
skeletal muscle fiber
4
smooth muscle cell
4
stomach
4
subcutaneous adipose tissue
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
Intercalated Cell Type A
3
Intercalated Cell Type B
3
Lymphatic Endothelial Cell
3
M2 Macrophage
3
Mast Cell
3
Medullary Thick Ascending Limb Cell
3
Mesangial Cell
3
Monocyte
3
Monocyte-derived Cell
3
Myofibroblast
3
Natural Killer T Cell
3
Natural Killer T Cell Type 1
3
Natural Killer T Cell Type 2
3
Non-Classical Monocyte
3
Parietal Epithelial Cell
3
Peritubular Capillary Endothelial Cell
3
Plasma Cell
3
Plasmacytoid Dendritic Cell
3
Podocyte
3
Principal Cell
3
Proximal Tubule Epithelial Cell Segment 1 and 2
3
Proximal Tubule Epithelial Cell Segment 3
3
Regulatory T Cell
3
Renin-positive Juxtaglomerular Granular Cell
3
S-shaped body
3
T Cell
3
T-helper 2 cell
3
Transitional Principal-Intercalated Cell
3
Vascular Smooth Muscle Cell / Pericyte
3
adult endothelial progenitor cell
3
central memory CD8-positive, alpha-beta T cell
3
effector memory CD8-positive, alpha-beta T cell
3
frontal cortex
3
hepatocyte(AFP)
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
leukocyte
3
liver
3
memory B cell
3
mesenchymal stem cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
pancreatic acinar cell
3
right atrium auricular region
3
skeletal muscle satellite cell
3
tibial nerve
2
Ammon's horn
2
CD4-positive helper T cell
2
Kupffer cell
2
Rh-4 cell
2
T cell
2
T follicular helper cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
adrenal gland
2
body of pancreas
2
bone marrow cell
2
brain
2
caudate nucleus
2
cerebellum
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
erythroid cell
2
fibroblast
2
fibroblast of cardiac tissue
2
glial cell
2
hematopoietic multipotent progenitor cell
2
hepatic stellate cell
2
kidney glomerular epithelial cell
2
kidney inner medulla collecting duct intercalated cell
2
kidney tubule cell
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive regulatory T cell
2
neural cell
2
occipital lobe
2
omental fat pad
2
ovary
2
pancreas
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
putamen
2
renal cortical epithelial cell
2
renal vesicle
2
skeletal muscle myoblast
2
skin fibroblast
2
smooth muscle cell of the coronary artery
2
spinal cord
2
spleen
2
testis
2
tibial artery
2
type I muscle cell
2
type II muscle cell
2
uterus
2
vascular associated smooth muscle cell
2
visceral abdominal adipose tissue
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
Organ
6
connective tissue
Life stage
1
adult
Date released
3
February, 2024
1
February, 2021
1
June, 2020
1
November, 2022
Software used
4
macs
2
r
1
deeptools
1
samtools
1
umitools
Lab
4
AMP-T2D consortium
2
Stephen Parker, UMich
Project
6
AMP
RFA
4
AMP
2
AMP2
month_released!
January, 2018
files.file_type!
bigWig
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP