Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
stem cell
Biosample term
127
monocyte
86
heart
83
stomach
78
kidney
70
brain
68
lung
66
muscle of arm
64
HeLa-S3
62
small intestine
61
A549
61
adrenal gland
59
placenta
56
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
53
H1-hESC
52
left lung
51
neural progenitor cell
48
CD8-positive, alpha-beta T cell
48
liver
47
thymus
44
right lung
43
islet of Langerhans
42
B cell
42
hematopoietic multipotent progenitor cell
42
right kidney
40
K562
39
endothelial cell
39
renal cortex interstitium
38
renal pelvis
38
retina
36
left kidney
35
hepatocyte
33
spinal cord
33
spleen
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
heart left ventricle
31
CD14-positive monocyte
30
adipose tissue
29
macrophage
25
MCF-7
25
adipocyte
25
smooth muscle cell
24
regulatory T cell
23
EndoC_BH1
23
body of pancreas
23
tibial nerve
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
epithelial cell of proximal tubule
22
pancreatic ductal cell
22
pericyte cell
22
sigmoid colon
22
trophoblast cell
21
T cell
21
T-helper 17 cell
21
foreskin keratinocyte
21
keratinocyte
20
breast cancer cell
20
mononuclear cell
20
natural killer cell
20
pigmented layer of retina
20
subcutaneous adipose tissue
19
caudate nucleus
19
glomerular endothelial cell
19
ovary
19
psoas muscle
18
HFFc6
18
coronary artery
18
embryonic stem cell
18
foreskin fibroblast
18
mesenchymal stem cell
18
pancreas
17
T-helper 2 cell
17
astrocyte
17
heart right ventricle
17
muscle of trunk
17
thyroid gland
17
transverse colon
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
fibroblast of lung
16
gastrocnemius medialis
16
induced pluripotent stem cell
16
layer of hippocampus
16
omental fat pad
16
right atrium auricular region
16
skeletal muscle tissue
16
substantia nigra
16
testis
15
CD4-positive, alpha-beta T cell
15
HepG2
15
cerebellum
15
fibroblast of cardiac tissue
15
neutrophil
15
osteoblast
15
skeletal muscle myoblast
15
tibial artery
15
upper lobe of left lung
14
GM12878
14
H9
14
ascending aorta
14
cardiac muscle cell
14
endocrine pancreas
14
mammary gland epithelial cell
14
pancreatic acinar cell
14
pancreatic beta cell
13
excitatory neuron
13
neurosphere
13
prostate gland
13
retinal pigment epithelial cell
13
skeletal muscle satellite cell
13
temporal lobe
12
Peyer's patch
12
bronchial epithelial cell
12
fibroblast of dermis
12
frontal cortex
12
left renal cortex interstitium
12
neuroblastoma cell
12
pancreatic alpha cell
12
putamen
11
aorta
11
erythroblast
11
lymphoblastoid cell line
11
mammary epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
pancreatic delta cell
10
22Rv1
10
epithelial cell of prostate
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
9
Ammon's horn
9
Rhabdomyosarcoma
9
SK-N-SH
9
breast epithelium
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
esophagus squamous epithelium
9
glomerular visceral epithelial cell
9
left renal pelvis
9
liposarcoma
9
neuronal stem cell
9
parathyroid adenoma
9
right renal pelvis
9
trophoblast
9
vagina
8
B-lymphoblastoid cell line
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus muscularis mucosa
8
fibroblast cell line
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
8
tongue
7
HEK293
7
IMR-90
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
foreskin melanocyte
7
hepatic stellate cell
7
kidney tubule cell
7
limb
7
mature neutrophil
7
mesendoderm
7
pancreatic stellate cell
7
right lobe of liver
7
skin fibroblast
7
stomach smooth muscle
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BJ cell
6
Brodmann (1909) area 46
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
month_released!
January, 2021
January, 2020
June, 2020
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP