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Citing CMDGA
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Annotation type
7
accessible chromatin
6
gene expression
3
differential activity
2
binding sites
2
histone modifications
2
target gene predictions
1
variant allelic effects
Annotation Category
2
Target gene links
Annotation type Category
2
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
16
brain
10
pituitary stalk
5
body of pancreas
5
pancreas
4
endocrine pancreas
3
SK-N-SH
3
caudate nucleus
3
layer of hippocampus
3
pancreatic A cell
3
type B pancreatic cell
2
Ammon's horn
2
Brodmann (1909) area 46
2
Panc1
2
SK-N-DZ
2
angular gyrus
2
cerebellum
2
cingulate gyrus
2
frontal cortex
2
pancreatic acinar cell
2
pancreatic delta cell
2
pancreatic ductal cell
2
substantia nigra
2
temporal lobe
1
8988T
1
A172
1
BE(2)-C
1
Daoy
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
EndoC_BH1
1
H54
1
HPDE6-E6E7
1
M059J
1
SK-N-MC
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
cerebellar cortex
1
choroid plexus epithelial cell
1
dorsolateral prefrontal cortex
1
globus pallidus
1
inferior parietal cortex
1
islet of Langerhans
1
medulla oblongata
1
medulloblastoma
1
midbrain
1
middle frontal gyrus
1
pancreatic alpha cell
1
pancreatic beta cell
1
pons
1
putamen
1
undifferentiated ESC (H9 cell line)
Organ
2
epithelium
2
pancreas
0
brain
Date released
January, 2021
1
May, 2021
1
November, 2021
Software used
2
abc
Lab
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
month_released!
January, 2021
Showing 2 of 2 results
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Download
FileSet
DSR263AKI
released
Annotation file set
: Target gene predictions of Ductal Cell (Pancreatic) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR051SJQ
released
Annotation file set
: enhancer-gene predicton of pancreatic-ductal-cell-AMP from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP