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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
snATAC-seq
Available data
2
bed bed9
1
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
26
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
2
in vitro differentiated cells
1
primary cell
Biosample term
97
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
25
kidney
24
heart
22
K562
20
fibroblast
19
HFFc6
19
brain
19
endothelial cell
19
pericyte cell
19
stomach
18
A549
17
muscle of arm
16
lung
16
muscle of leg
15
small intestine
14
adrenal gland
14
placenta
14
smooth muscle cell
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
excitatory neuron
12
macrophage
11
B cell
11
coronary artery
11
heart left ventricle
11
right kidney
11
right lung
11
thymus
10
astrocyte
10
hematopoietic multipotent progenitor cell
10
renal cortex interstitium
10
renal pelvis
10
tibial nerve
9
CD4-positive, alpha-beta memory T cell
9
T cell
9
left kidney
9
tibial artery
8
ascending aorta
8
body of pancreas
8
caudate nucleus
8
omental fat pad
8
right atrium auricular region
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
cerebellum
7
colon epithelial cell
7
frontal cortex
7
left cardiac atrium
7
lymphocyte
7
spinal cord
7
spleen
6
Ammon's horn
6
adipose tissue
6
fibroblast of cardiac tissue
6
heart right ventricle
6
keratinocyte
6
mononuclear cell
6
olfactory receptor cell
6
pancreatic acinar cell
6
pancreatic ductal cell
6
putamen
6
skeletal muscle satellite cell
6
subcutaneous adipose tissue
6
substantia nigra
5
MCF-7
5
cortical cell of adrenal gland
5
endothelial cell of umbilical vein
5
erythroblast
5
inhibitory neuron
5
islet of Langerhans
5
luminal epithelial cell of mammary gland
5
mammary gland epithelial cell
5
pancreas
5
retina
5
sigmoid colon
5
trophoblast cell
5
type II pneumocyte
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
amygdala
4
angular gyrus
4
anterior cingulate cortex
4
aorta
4
blood vessel smooth muscle cell
4
cerebellum (Hemisphere)
4
chorionic villus
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
enteric smooth muscle cell
4
foreskin keratinocyte
4
gabaergic neuron
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
glutamatergic neuron
4
hypothalamus
4
iPSC derived cell line
4
left ventricle myocardium
4
muscle of trunk
4
nucleus accumbens
4
osteoblast
4
ovary
4
pancreatic beta cell
4
psoas muscle
4
skin fibroblast
4
smooth muscle cell of the esophagus
4
temporal lobe
4
thoracic aorta
4
thyroid gland
4
transverse colon
3
cardiac fibroblast
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
adipocyte
3
cardiac muscle cell
3
chorion membrane
3
endocardial cell
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enteric neuron
3
enterocyte
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
mesenchymal stem cell
3
mesothelial cell
3
naive T cell
3
natural killer cell
3
neurosphere
3
oligodendrocyte precursor cell
3
pancreatic A cell
3
pancreatic alpha cell
3
regulatory T cell
3
retinal pigment epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
schwann cell
3
skeletal muscle fiber
3
skeletal muscle tissue
3
testis
3
type B pancreatic cell
3
type I pneumocyte
3
upper lobe of left lung
2
22Rv1
2
Brodmann (1909) area 46
2
CD4-positive, alpha-beta T cell
2
CD8-positive, alpha-beta T cell
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
alveolar macrophage
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
basal cell of epidermis
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cardiac endothelial cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
ciliated cell
2
cingulate gyrus
2
club cell
2
colon goblet cell
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
eccrine cell
2
endodermal cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus
Organ
3
connective tissue
Life stage
1
adult
1
unknown
Date released
2
September, 2022
1
November, 2021
Software used
2
chromhmm
1
macs
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
month_released!
January, 2022
organ_slims!
liver
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE