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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
128
monocyte
90
heart
85
stomach
81
kidney
71
brain
67
lung
67
muscle of arm
64
HeLa-S3
62
A549
62
small intestine
61
adrenal gland
59
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
CD8-positive, alpha-beta T cell
51
neural progenitor cell
48
liver
48
thymus
45
right lung
43
B cell
43
hematopoietic multipotent progenitor cell
42
islet of Langerhans
42
right kidney
41
K562
41
endothelial cell
40
renal cortex interstitium
40
renal pelvis
40
retina
37
hepatocyte
36
left kidney
34
spinal cord
33
heart left ventricle
33
spleen
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
30
adipose tissue
30
fibroblast
26
MCF-7
26
adipocyte
26
regulatory T cell
25
pancreatic ductal cell
25
smooth muscle cell
24
body of pancreas
24
macrophage
24
tibial nerve
23
EndoC_BH1
23
epithelial cell of proximal tubule
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
T-helper 1 cell
22
foreskin keratinocyte
21
caudate nucleus
21
glomerular endothelial cell
21
keratinocyte
21
natural killer cell
21
pancreas
21
pericyte cell
20
T cell
20
T-helper 17 cell
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
20
subcutaneous adipose tissue
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
mesenchymal stem cell
19
ovary
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
pancreatic beta cell
18
right atrium auricular region
18
tibial artery
17
HepG2
17
cardiac muscle cell
17
muscle of trunk
17
omental fat pad
17
osteoblast
17
pancreatic acinar cell
17
pancreatic alpha cell
17
thyroid gland
17
transverse colon
16
T-helper 2 cell
16
astrocyte
16
chorionic villus
16
endothelial cell of hepatic sinusoid
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
induced pluripotent stem cell
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
testis
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
ascending aorta
15
layer of hippocampus
15
mammary gland epithelial cell
15
pancreatic delta cell
15
substantia nigra
14
H9
14
cerebellum
14
endocrine pancreas
14
frontal cortex
14
neutrophil
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
13
skeletal muscle satellite cell
13
temporal lobe
12
Ammon's horn
12
excitatory neuron
12
fibroblast of dermis
12
left renal cortex interstitium
12
mammary epithelial cell
12
neuroblastoma cell
12
prostate gland
12
putamen
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
11
left cardiac atrium
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
10
neuronal stem cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
skin fibroblast
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
parathyroid adenoma
9
tongue
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus
8
esophagus muscularis mucosa
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
B-lymphoblastoid cell line
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
month_released!
January, 2022
August, 2022
award.project!
LungMap
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP