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Schema
Citing CMDGA
Clear Filters
Annotation type
1
variant allelic effects
Annotation Category
53
cis-regulatory elements
16
Target gene links
1
Gene expression levels
1
Genetic variant effects
Annotation type Category
1
DNase-seq
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
17
islet of Langerhans
9
subcutaneous adipose tissue
7
coronary artery
7
liver
6
fibroblast
6
right atrium auricular region
6
tibial artery
6
tibial nerve
5
ascending aorta
5
body of pancreas
5
caudate nucleus
5
cerebellum (Hemisphere)
5
endothelial cell
5
frontal cortex
5
monocyte
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neutrophil
5
omental fat pad
5
putamen
4
Ammon's horn
4
C1 segment of cervical spinal cord
4
adipose tissue
4
amygdala
4
anterior cingulate cortex
4
cartilage tissue
4
cerebellum
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
gastrocnemius medialis(Muscle - Skeletal)
4
hypothalamus
4
left ventricle myocardium
4
macrophage
4
nucleus accumbens
4
right lobe of liver
4
smooth muscle cell
4
substantia nigra
3
enterocyte
3
myofibroblast cell
2
cardiac fibroblast
2
muscle of leg
2
CD4-positive helper T cell
2
MIN6
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Schwann cell
2
T cell
2
basal cell
2
blood
2
cardiac muscle cell
2
epithelial cell of esophagus
2
goblet cell
2
heart
2
heart left ventricle
2
hepatocyte
2
kidney
2
mesenchymal stem cell
2
retina
2
skeletal muscle fiber
2
skeletal muscle tissue
2
tissue
2
type I muscle cell
2
type II muscle cell
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
Adipose SGBS cell line (adipocyte)
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
adipocyte
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain
1
brain pericyte
1
bronchial goblet cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cerebrospinal fluid
1
choroid plexus epithelial cell
1
cortical cell of adrenal gland
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
fibroblast of the aortic adventitia
1
globus pallidus
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granulosa cell
1
heart right ventricle
1
hepatic stellate cell
1
keratinocyte
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
medulla oblongata
1
mesothelial cell
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
naive t cell
1
nephron tubule
1
occipital lobe
1
pancreas
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
pons
1
progenitor cell
1
purified protein and synthetic DNA oligo binding assay
1
renal cortex interstitium
1
renal cortical epithelial cell
1
renal glomerulus
1
renal pelvis
1
right kidney
1
right renal cortex interstitium
1
right renal pelvis
1
skeletal muscle cell
1
skeletal muscle myoblast
1
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
superior temporal gyrus
1
synovial joint
1
thoracic aorta
1
thyroid follicular cell
1
type II pneumocyte
Organ
1
brain
Date released
January, 2022
1
May, 2020
Software used
1
deltasvm
Lab
1
AMP-T2D consortium
Project
1
AMP
RFA
1
AMP
month_released!
January, 2022
Showing 1 of 1 results
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Download
FileSet
DSR154FEP
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP