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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
DNase-seq
2
ChIP-seq
Available data
3
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
127
monocyte
49
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
39
endothelial cell
32
B cell
32
hepatocyte
27
CD14-positive monocyte
26
fibroblast
23
CD4-positive, alpha-beta memory T cell
23
regulatory T cell
21
epithelial cell of proximal tubule
21
macrophage
21
pericyte cell
20
glomerular endothelial cell
20
smooth muscle cell
19
T-helper 1 cell
19
pancreatic ductal cell
18
pancreatic beta cell
17
T-helper 17 cell
17
natural killer cell
17
pancreatic alpha cell
16
T cell
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
16
pancreatic delta cell
15
CD8-positive, alpha-beta memory T cell
15
astrocyte
15
foreskin keratinocyte
15
osteoblast
14
endothelial cell of umbilical vein
14
keratinocyte
14
mononuclear cell
14
trophoblast cell
13
T-helper 2 cell
13
foreskin fibroblast
13
naive thymus-derived CD4-positive, alpha-beta T cell
12
CD4-positive, alpha-beta T cell
12
excitatory neuron
12
neutrophil
12
skeletal muscle myoblast
11
mammary epithelial cell
11
skeletal muscle satellite cell
10
bronchial epithelial cell
10
fibroblast of lung
10
glomerular visceral epithelial cell
10
mammary gland epithelial cell
10
neurosphere
9
fibroblast of cardiac tissue
9
memory B cell
9
skeletal muscle fiber
8
dermis blood vessel endothelial cell
8
fibroblast of dermis
8
glutamatergic neuron
8
hepatic stellate cell
8
kidney tubule cell
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
pancreatic stellate cell
8
retinal pigment epithelial cell
7
epithelial cell of prostate
7
erythroblast
7
kidney glomerular epithelial cell
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
mesangial cell
7
renal cortical epithelial cell
7
skin fibroblast
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
cardiac muscle cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
enterocyte
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
fibroblast of villous mesenchyme
6
gamma-delta T cell
6
kidney epithelial cell
6
luminal epithelial cell of mammary gland
6
mast cell
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
naive B cell
6
naive T cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
pulmonary artery endothelial cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
central memory CD8-positive, alpha-beta T cell
5
choroid plexus epithelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
gabaergic neuron
5
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
myofibroblast cell
5
pancreatic endothelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
tracheal epithelial cell
4
T follicular helper cell
4
acute myeloid leukemia cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic endothelial cell
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
lung microvascular endothelial cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
Organ
4
blood vessel
4
epithelium
4
kidney
4
vasculature
Life stage
3
embryonic
1
fetal
Date released
2
September, 2022
1
January, 2020
1
May, 2020
Software used
2
r
chromhmm
1
deltasvm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
January, 2022
software_used.software.name!
chromhmm
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR302SLS
released
Annotation file set
: Candidate regulatory elements for BSS01077 kidney capillary endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR668BHK
released
Annotation file set
: Target gene predictions for BSS01077 kidney capillary endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR528XCA
released
Annotation file set
: Variant allelic effects of kidney capillary endothelial cell ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR479BAK
released
Annotation file set
: Accessible chromatin annotation of kidney capillary endothelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP