Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
Available data
4
bed bed3+
1
bed bed9
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
124
monocyte
43
CD8-positive, alpha-beta T cell
40
common myeloid progenitor, CD34-positive
35
B cell
32
endothelial cell
28
hepatocyte
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
fibroblast
22
pericyte cell
22
regulatory T cell
21
CD8-positive, alpha-beta memory T cell
21
macrophage
20
T cell
20
smooth muscle cell
19
T-helper 1 cell
18
T-helper 17 cell
18
mononuclear cell
17
pancreatic beta cell
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
16
pancreatic delta cell
16
pancreatic ductal cell
15
endothelial cell of umbilical vein
15
natural killer cell
15
pancreatic alpha cell
14
T-helper 2 cell
14
astrocyte
14
trophoblast cell
13
fibroblast of lung
13
keratinocyte
12
excitatory neuron
12
fibroblast of cardiac tissue
12
foreskin keratinocyte
12
mammary gland epithelial cell
12
neutrophil
12
skeletal muscle myoblast
12
skeletal muscle satellite cell
11
erythroblast
11
fibroblast of dermis
10
osteoblast
9
kidney tubule cell
9
memory B cell
9
naive T cell
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neurosphere
9
skeletal muscle fiber
9
skin fibroblast
8
epithelial cell of proximal tubule
8
glomerular endothelial cell
8
glutamatergic neuron
8
naive thymus-derived CD8-positive, alpha-beta T cell
8
pancreatic stellate cell
7
CD4-positive, alpha-beta T cell
7
bronchial epithelial cell
7
epithelial cell of prostate
7
foreskin fibroblast
7
hepatic stellate cell
7
kidney glomerular epithelial cell
7
luminal epithelial cell of mammary gland
7
mature neutrophil
7
renal cortical epithelial cell
7
retinal pigment epithelial cell
7
type I muscle cell
7
type II muscle cell
7
type II pneumocyte
6
alternatively activated macrophage
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
fibroblast of breast
6
glomerular visceral epithelial cell
6
kidney epithelial cell
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
naive B cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
basal cell
5
cardiac muscle cell
5
central memory CD8-positive, alpha-beta T cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
fibroblast of mammary gland
5
fibroblast of pulmonary artery
5
fibroblast of villous mesenchyme
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney capillary endothelial cell
5
pancreatic endothelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
4
CD1c-positive myeloid dendritic cell
4
T follicular helper cell
4
adipocyte
4
blood vessel smooth muscle cell
4
brain microvascular endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of peridontal ligament
4
fibroblast of the aortic adventitia
4
gamma-delta T cell
4
iris pigment epithelial cell
4
mammary epithelial cell
4
mast cell
4
mature natural killer cell
4
megakaryocyte
4
memory T cell
4
memory regulatory T cell
4
mesothelial cell
4
myofibroblast cell
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pulmonary artery endothelial cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
3
activated CD4-positive, alpha-beta T cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
aortic endothelial cell
3
astrocyte of the spinal cord
3
ciliated cell
3
club cell
3
endocardial cell
3
enteric neuron
3
epidermal melanocyte
Organ
5
musculature of body
Life stage
3
unknown
Date released
3
September, 2022
February, 2021
1
January, 2020
1
May, 2020
Software used
2
r
1
chromhmm
1
deltasvm
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
January, 2022
February, 2021
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR404VRF
released
Annotation file set
: Candidate regulatory elements for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722IWA
released
Annotation file set
: Target gene predictions for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR253DCD
released
Annotation file set
: Chromatin states for BSS01572 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR592EHG
released
Annotation file set
: Genetic variants with deltaSVM predictions in skeletal muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR310QRT
released
Annotation file set
: Accessible chromatin annotation of skeletal muscle cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP