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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
125
monocyte
69
heart
63
stomach
62
HeLa-S3
57
A549
56
kidney
54
brain
52
H1-hESC
50
lung
50
muscle of arm
48
small intestine
47
adrenal gland
44
CD8-positive, alpha-beta T cell
44
muscle of leg
44
neural progenitor cell
44
placenta
41
large intestine
40
common myeloid progenitor, CD34-positive
39
left lung
39
liver
39
muscle of back
38
K562
37
B cell
37
thymus
35
retina
34
endothelial cell
34
right lung
33
islet of Langerhans
32
hematopoietic multipotent progenitor cell
32
right kidney
31
hepatocyte
30
renal pelvis
29
renal cortex interstitium
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
fibroblast
27
left kidney
26
adipose tissue
26
heart left ventricle
25
spinal cord
24
smooth muscle cell
23
macrophage
23
spleen
22
adipocyte
22
pericyte cell
22
regulatory T cell
21
CD8-positive, alpha-beta memory T cell
21
EndoC_BH1
21
T cell
21
pancreatic ductal cell
21
tibial nerve
20
body of pancreas
20
pigmented layer of retina
19
HFFc6
19
T-helper 1 cell
19
coronary artery
18
MCF-7
18
T-helper 17 cell
18
trophoblast cell
17
caudate nucleus
17
mononuclear cell
17
pancreatic beta cell
17
psoas muscle
17
right atrium auricular region
17
sigmoid colon
17
tibial artery
16
endothelial cell of hepatic sinusoid
16
heart right ventricle
16
pancreas
15
mesenchymal stem cell
15
natural killer cell
15
ovary
15
pancreatic acinar cell
15
pancreatic delta cell
14
T-helper 2 cell
14
astrocyte
14
endothelial cell of umbilical vein
14
frontal cortex
14
pancreatic alpha cell
14
subcutaneous adipose tissue
14
thyroid gland
13
GM12878
13
HepG2
13
ascending aorta
13
fibroblast of cardiac tissue
13
fibroblast of lung
13
gastrocnemius medialis
13
omental fat pad
12
embryonic stem cell
12
endocrine pancreas
12
excitatory neuron
12
foreskin keratinocyte
12
mammary gland epithelial cell
12
muscle of trunk
12
neutrophil
12
retinal pigment epithelial cell
12
skeletal muscle satellite cell
12
transverse colon
11
Ammon's horn
11
aorta
11
chorionic villus
11
erythroblast
11
fibroblast of dermis
11
keratinocyte
11
skeletal muscle myoblast
10
H9
10
Peyer's patch
10
cerebellum
10
foreskin fibroblast
10
left cardiac atrium
10
pancreatic stellate cell
10
skeletal muscle tissue
10
substantia nigra
9
kidney tubule cell
9
osteoblast
9
putamen
9
skin fibroblast
9
testis
9
upper lobe of left lung
8
SK-N-SH
8
colon epithelial cell
8
immortal human breast epithelial cell line cell
8
layer of hippocampus
8
lymphocyte
8
naive T cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
temporal lobe
8
thoracic aorta
8
trophoblast
7
CD4-positive, alpha-beta T cell
7
NAMALWA cell
7
SK-N-DZ
7
breast epithelium
7
cardiac muscle cell
7
chorion membrane
7
cingulate gyrus
7
endometrium adenocarcinoma
7
esophagus squamous epithelium
7
extended pluripotent stem (EPS) cells
7
glomerular endothelial cell
7
hepatic stellate cell
7
limb
7
memory B cell
6
22Rv1
6
Brodmann (1909) area 46
6
CD4-positive helper T cell
6
GM19240
6
IMR-90
6
KARPAS-422 cell
6
LNCaP clone FGC
6
SGBS preadipocytes
6
T47D
6
angular gyrus
6
colonic mucosa
6
glomerular visceral epithelial cell
6
induced pluripotent stem cell
6
kidney glomerular epithelial cell
6
left renal cortex interstitium
6
left renal pelvis
6
mucosa of rectum
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neurosphere
6
right lobe of liver
6
right renal pelvis
6
tongue
6
type I muscle cell
5
cardiac fibroblast
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
BE(2)-C
5
BJ cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Caco-2 cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
Life stage
3
embryonic
Date released
February, 2021
3
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
month_released!
January, 2022
February, 2021
Showing 6 of 6 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP