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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
accessible chromatin
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
53
H1-hESC
53
HeLa-S3
49
heart
47
kidney
46
neural progenitor cell
44
brain
35
stomach
34
muscle of arm
34
placenta
32
endothelial cell
32
lung
31
CD8-positive, alpha-beta T cell
31
muscle of leg
30
fibroblast
30
small intestine
29
large intestine
29
macrophage
29
monocyte
28
islet of Langerhans
28
thymus
26
left lung
25
muscle of back
23
EndoC_BH1
23
pancreatic ductal cell
23
right lung
22
K562
22
right kidney
22
smooth muscle cell
21
adrenal gland
21
pericyte cell
21
renal pelvis
21
spinal cord
20
adipocyte
20
breast cancer cell
20
renal cortex interstitium
19
HFFc6
19
liver
18
B cell
18
embryonic stem cell
18
keratinocyte
18
left kidney
17
CD14-positive monocyte
16
hepatocyte
16
induced pluripotent stem cell
15
astrocyte
14
HepG2
14
pancreatic acinar cell
14
retinal pigment epithelial cell
14
trophoblast cell
13
endothelial cell of umbilical vein
13
excitatory neuron
13
heart left ventricle
13
osteoblast
13
pancreatic beta cell
13
regulatory T cell
12
CD4-positive, alpha-beta memory T cell
12
T cell
12
lymphoblastoid cell line
12
neuroblastoma cell
12
pancreatic delta cell
11
GM12878
11
T-helper 17 cell
11
cardiac muscle cell
11
erythroblast
11
fibroblast of cardiac tissue
11
foreskin fibroblast
11
foreskin keratinocyte
11
mesenchymal stem cell
10
Rhabdomyosarcoma
10
gastric cancer cell
10
left cardiac atrium
10
progenitor cell of endocrine pancreas
9
H9
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
liposarcoma
9
pancreatic alpha cell
9
retina
9
skeletal muscle myoblast
8
B-lymphoblastoid cell line
8
fibroblast cell line
8
heart right ventricle
8
lymphocyte
8
mammary epithelial cell
8
mammary gland epithelial cell
8
pancreatic stellate cell
8
pituitary stalk
8
skeletal muscle fiber
8
skin fibroblast
8
spleen
7
CD4-positive helper T cell
7
IMR-90
7
Jurkat
7
MCF-7
7
NAMALWA cell
7
T-helper 1 cell
7
T-helper 2 cell
7
bronchial epithelial cell
7
colon epithelial cell
7
common myeloid progenitor, CD34-positive
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of lung
7
memory B cell
7
mesendoderm
7
muscle of trunk
7
natural killer cell
7
neuronal stem cell
7
pancreas
7
skeletal muscle satellite cell
6
22Rv1
6
AG04449 cell
6
AG04450 cell
6
BE(2)-C
6
BJ cell
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
HEK293
6
HUES8
6
NT2-D1 cell
6
PC-9
6
Rh-4 cell
6
SGBS preadipocytes
6
WERI-Rb-1
6
adipose tissue
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
choroid plexus epithelial cell
6
endodermal cell
6
fibroblast of dermis
6
glomerular endothelial cell
6
hESC cell
6
iPSC derived cell line
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neutrophil
6
trophoblast
6
type I muscle cell
5
A549
5
CD1c-positive myeloid dendritic cell
5
CMK
5
CyT49
5
Ewing sarcoma
5
GM12891
5
GM12892
5
GM18507
5
GM19240
5
H7-hESC
5
HCT-116 cell
5
KARPAS-422 cell
5
MG63
5
SK-N-MC
5
acute myeloid leukemia
5
chorion membrane
5
chorionic villus
5
coronary artery
5
enterocyte
5
glomerular visceral epithelial cell
5
osteosarcoma
5
ovary
5
prostate cancer cell line
5
smooth muscle cell of the coronary artery
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
CD4-positive, alpha-beta T cell
4
CD8-positive, alpha-beta memory T cell
4
COLO205
4
Caco-2 cell
4
Daoy
4
GM08714
4
GM18505
4
GM19099
4
GM19193
4
GM19238
4
GM19239
4
HAC cell
4
HAP-1
4
HBMEC cell
4
HK-2 cell
4
HL-60
4
HS-SY-2 cell
4
HT-29
4
HUES6
4
LNCAP
4
LoVo cell
4
MDA-MB-231 cell
4
MM.1S
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
OCI-LY7
4
PANC-1 cell
4
RS4-11 cell
4
SK-N-DZ
4
SK-N-SH
Organ
5
lung
Life stage
adult
Date released
2
February, 2021
1
June, 2020
1
May, 2021
1
October, 2022
Software used
3
macs
1
abc
1
chromhmm
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
month_released!
June, 2021
annotation_type!
candidate regulatory elements
relevant_life_stage!
adult
Showing 5 of 5 results
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Download
FileSet
DSR259UTD
released
Annotation file set
: Binding sites annotation for A549 (A549) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR761KYR
released
Annotation file set
: Histone modifications annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR378GKW
released
Annotation file set
: Binding sites annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR510YWQ
released
Annotation file set
: enhancer-gene predicton of A549_treated_with_ethanol_0.02_percent_for_1_hour-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008HJP
released
Annotation file set
: Accessible chromatin annotation for Lung A549 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP