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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
32
small intestine
27
large intestine
12
sigmoid colon
9
transverse colon
6
Peyer's patch
5
colon epithelial cell
5
colonic mucosa
5
duodenal mucosa
5
mucosa of rectum
4
HCT116
4
muscle layer of colon
4
muscle layer of duodenum
3
HT-29
3
rectum smooth muscle tissue
2
SW480
2
enteric smooth muscle cell
1
HCT-116 cell
1
enterocyte of epithelium of small intestine
1
paneth cell
1
small intestine goblet cell
Disease term
2
colorectal adenocarcinoma
Organ
3
intestine
3
large intestine
Life stage
2
adult
Date released
2
September, 2022
1
May, 2021
Software used
1
abc
1
chromhmm
1
r
Lab
2
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
3
AMP
RFA
3
AMP
month_released!
June, 2021
Showing 3 of 3 results
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Download
FileSet
DSR883VDG
released
Annotation file set
: Target gene predictions for BSS00708 HT-29 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR895ABN
released
Annotation file set
: Chromatin states for BSS00708 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP