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Citing CMDGA
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Annotation type
1
target gene predictions
Annotation Category
1
Target gene links
Annotation type Category
1
Capture-C
Available data
1
bed bed3+
File set status
1
released
Genome assembly (visualization)
1
hg19
Organism
1
Homo sapiens
Biosample type
1
stem cell
Biosample term
112
monocyte
86
heart
84
stomach
74
kidney
70
brain
67
muscle of arm
65
lung
64
HeLa-S3
62
A549
61
small intestine
59
adrenal gland
59
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
48
CD8-positive, alpha-beta T cell
47
thymus
46
H1-hESC
45
right lung
43
liver
42
B cell
42
hematopoietic multipotent progenitor cell
42
neural progenitor cell
41
K562
41
right kidney
40
renal cortex interstitium
40
renal pelvis
38
retina
36
left kidney
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
endothelial cell
31
spleen
30
fibroblast
30
heart left ventricle
27
adipose tissue
26
MCF-7
25
adipocyte
24
hepatocyte
24
islet of Langerhans
24
smooth muscle cell
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
foreskin keratinocyte
22
macrophage
22
pericyte cell
22
sigmoid colon
21
T cell
21
keratinocyte
20
breast cancer cell
20
mononuclear cell
20
natural killer cell
20
pigmented layer of retina
19
body of pancreas
19
foreskin fibroblast
19
regulatory T cell
19
tibial nerve
18
HFFc6
18
gastrocnemius medialis
18
pancreas
17
cardiac muscle cell
17
endothelial cell of umbilical vein
17
mesenchymal stem cell
17
muscle of trunk
17
ovary
17
psoas muscle
17
thyroid gland
17
transverse colon
16
GM12878
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
heart right ventricle
16
retinal pigment epithelial cell
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
H9
15
HepG2
15
astrocyte
15
caudate nucleus
15
coronary artery
15
embryonic stem cell
15
layer of hippocampus
15
mammary gland epithelial cell
15
pancreatic ductal cell
15
skeletal muscle tissue
15
testis
14
T-helper 1 cell
14
endocrine pancreas
14
neutrophil
14
osteoblast
14
skeletal muscle myoblast
14
tibial artery
13
Peyer's patch
13
T-helper 17 cell
13
T-helper 2 cell
13
bronchial epithelial cell
13
neurosphere
13
right atrium auricular region
12
excitatory neuron
12
fibroblast of dermis
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic beta cell
12
prostate gland
12
skeletal muscle satellite cell
12
substantia nigra
11
EndoC_BH1
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
epithelial cell of prostate
11
erythroblast
11
left renal cortex interstitium
11
left renal pelvis
11
pancreatic acinar cell
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
ascending aorta
10
choroid plexus epithelial cell
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
neuronal stem cell
10
omental fat pad
10
pancreatic alpha cell
10
skin fibroblast
10
thoracic aorta
9
SK-N-DZ
9
SK-N-SH
9
aorta
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
frontal cortex
9
kidney tubule cell
9
liposarcoma
9
pancreatic delta cell
9
parathyroid adenoma
9
right renal cortex interstitium
9
subcutaneous adipose tissue
9
tongue
9
trophoblast
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cerebellum
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus muscularis mucosa
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
Ammon's horn
7
B-lymphoblastoid cell line
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast cell line
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
hepatic stellate cell
7
mature neutrophil
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
Daoy
6
GM19240
Organ
1
brain
Date released
1
September, 2023
Software used
1
chicago
Lab
1
Struan F.A. Grant, CHOP
Project
1
AMP
RFA
1
AMP2
month_released!
March, 2020
Showing 1 of 1 results
table-tab-icon
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Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP