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Schema
Citing CMDGA
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Annotation type
5
target gene predictions
3
gene expression
Annotation Category
cis-regulatory elements
5
Target gene links
3
Gene expression levels
Annotation type Category
3
ATAC-seq
2
DNase-seq
2
H3K27ac ChIP-Seq
2
RNA-seq
1
pCHi-C
1
scRNA-seq
1
snATAC-seq
Available data
5
bed bed3+
3
tsv
1
txt
File set status
8
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
55
HeLa-S3
47
H1-hESC
30
islet of Langerhans
26
monocyte
24
heart
23
K562
23
kidney
23
stomach
22
endothelial cell
20
brain
19
A549
19
CD14-positive monocyte
19
HFFc6
18
adrenal gland
18
epithelial cell of proximal tubule
18
liver
18
lung
17
induced pluripotent stem cell
17
macrophage
17
muscle of arm
17
small intestine
16
glomerular endothelial cell
16
placenta
15
adipose tissue
15
hepatocyte
14
common myeloid progenitor, CD34-positive
14
large intestine
14
muscle of leg
13
left lung
13
muscle of back
13
pancreatic ductal cell
13
regulatory T cell
13
smooth muscle cell
13
subcutaneous adipose tissue
13
thymus
12
B cell
12
EndoC_BH1
12
fibroblast
11
T-helper 1 cell
11
T-helper 17 cell
11
cardiomyocytes
11
hematopoietic multipotent progenitor cell
11
neural progenitor cell
11
pancreatic delta cell
11
right kidney
11
right lung
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pericyte cell
10
pituitary stalk
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
adipocyte
9
body of pancreas
9
coronary artery
9
extended pluripotent stem (EPS) cells
9
heart left ventricle
9
left kidney
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
9
progenitor cell of endocrine pancreas
9
spinal cord
9
spleen
9
tibial nerve
8
CD8-positive, alpha-beta T cell
8
GM12878
8
H9
8
T cell
8
natural killer cell
8
right atrium auricular region
7
CD8-positive, alpha-beta memory T cell
7
T-helper 2 cell
7
caudate nucleus
7
dendritic cell
7
frontal cortex
7
glomerular visceral epithelial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
lymphocyte
7
ovary
7
tibial artery
7
trophoblast cell
6
MCF-7
6
cerebellum
6
iPSC derived cell line
6
keratinocyte
6
kidney interstitial cell
6
lymphoblastoid cell line
6
mesenchymal stem cell
6
mononuclear cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
olfactory receptor cell
6
omental fat pad
6
pancreatic stellate cell
6
putamen
6
retina
6
sigmoid colon
6
skeletal muscle tissue
6
substantia nigra
6
thyroid gland
6
transverse colon
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
ascending aorta
5
astrocyte
5
gastrocnemius medialis
5
heart right ventricle
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
mammary gland epithelial cell
5
memory B cell
5
mesangial cell
5
muscle of trunk
5
pancreas
5
psoas muscle
5
skeletal muscle myoblast
5
testis
4
CD4-positive helper T cell
4
CyT49
4
HUES8
4
adult endothelial progenitor cell
4
bone tissue
4
cardiac muscle cell
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cartilage tissue
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
endothelial cell of umbilical vein
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
fibroblast of lung
4
foreskin keratinocyte
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
layer of hippocampus
4
nephron progenitor
4
osteoblast
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
Life stage
1
adult
Date released
4
May, 2021
1
August, 2021
1
January, 2021
1
May, 2020
1
November, 2021
Software used
3
abc
3
r
1
chicago
1
cicero
1
seurat
Lab
3
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Project
6
AMP
1
ENCODE
1
T1D
RFA
5
AMP
1
AMP2
1
ENCODE3
1
T1D
month_released!
March, 2020
annotation_category!
cis-regulatory elements
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR786GAR
released
Annotation file set
: Target gene predictions of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR072FLD
released
Annotation file set
: GSE118165 gene expression annotation of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579KZW
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR485QCY
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR886AVL
released
Annotation file set
: enhancer-gene predicton of CD8-positive_alpha-beta_T_cell-Corces2016 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR603PAJ
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP