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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
caQTL
1
eQTL
Annotation Category
19
cis-regulatory elements
10
Gene expression levels
7
Target gene links
3
Genetic variant effects
Annotation type Category
2
snATAC-seq
1
RNA-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
13
islet of Langerhans
9
subcutaneous adipose tissue
8
liver
8
macrophage
8
monocyte
6
coronary artery
6
lymphoblastoid cell line
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neutrophil
6
putamen
6
substantia nigra
5
amygdala
5
anterior cingulate cortex
5
caudate nucleus
5
cerebellum
5
frontal cortex
5
hypothalamus
5
nucleus accumbens
5
omental fat pad
5
right atrium auricular region
5
tibial artery
5
tibial nerve
4
Ammon's horn
4
C1 segment of cervical spinal cord
4
adipose tissue
4
ascending aorta
4
body of pancreas
4
cartilage tissue
4
cerebellum (Hemisphere)
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
gastrocnemius medialis(Muscle - Skeletal)
4
left ventricle myocardium
4
right lobe of liver
3
blood cell
3
endothelial cell
3
skin of body
2
CD4-positive helper T cell
2
MIN6
2
T cell
2
articular chondrocyte
2
blood
2
brain
2
fibroblast
2
iPSC derived cell line
2
mesenchymal stem cell
2
muscle
2
regulatory T cell
2
skeletal muscle tissue
2
smooth muscle cell
2
tissue
2
type I muscle cell
2
type II muscle cell
1
Leydig cell
1
T follicular helper cell
1
T-helper 1 cell
1
T-helper 17 cell
1
T-helper 2 cell
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adrenal gland
1
breast
1
cerebellar hemisphere
1
cerebrospinal fluid
1
colon sigmoid
1
cortex
1
cortex of kidney
1
dorsolateral prefrontal cortex
1
esophagus
1
esophagus mucosa
1
esophagus muscularis mucosa
1
fat cell
1
fibroblast of the aortic adventitia
1
heart left ventricle
1
helper T cell
1
kidney
1
layer of hippocampus
1
lung
1
microglial cell
1
minor salivary gland
1
naive B cel
1
naive t cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell
1
nephron tubule
1
ovary
1
pancreas
1
pituitary gland
1
placenta
1
progenitor cell
1
prostate gland
1
purified protein and synthetic DNA oligo binding assay
1
renal glomerulus
1
retina
1
sensory neuron
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
stomach
1
synovial joint
1
testis
1
thyroid gland
1
transverse colon
1
uterus
1
vagina
1
visceral abdominal adipose tissue
Organ
3
epithelium
Date released
1
February, 2023
1
February, 2024
1
October, 2022
Software used
deltasvm
2
rasqual
1
eigenmt
1
qTLtools
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
3
AMP
RFA
2
AMP2
1
AMP
month_released!
March, 2023
software_used.software.name!
deltasvm
Showing 3 of 3 results
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Download
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP