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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
131
monocyte
64
HeLa-S3
62
A549
54
common myeloid progenitor, CD34-positive
51
CD8-positive, alpha-beta T cell
50
H1-hESC
44
B cell
43
hematopoietic multipotent progenitor cell
41
K562
41
endothelial cell
41
liver
39
islet of Langerhans
38
neural progenitor cell
33
hepatocyte
33
stomach
32
CD4-positive, alpha-beta memory T cell
32
fibroblast
32
macrophage
31
CD14-positive monocyte
31
adipose tissue
31
kidney
30
adrenal gland
30
spleen
28
regulatory T cell
28
retina
26
MCF-7
26
adipocyte
26
heart left ventricle
25
tibial nerve
24
body of pancreas
23
T-helper 1 cell
23
epithelial cell of proximal tubule
23
natural killer cell
23
sigmoid colon
22
CD8-positive, alpha-beta memory T cell
22
T cell
22
caudate nucleus
22
foreskin keratinocyte
22
pancreas
22
pericyte cell
21
EndoC_BH1
21
T-helper 17 cell
21
glomerular endothelial cell
21
keratinocyte
21
pancreatic ductal cell
21
smooth muscle cell
21
subcutaneous adipose tissue
20
breast cancer cell
20
coronary artery
20
mononuclear cell
20
pigmented layer of retina
20
psoas muscle
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart
19
right atrium auricular region
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
substantia nigra
18
thyroid gland
18
tibial artery
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
omental fat pad
17
osteoblast
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
fibroblast of lung
16
layer of hippocampus
16
ovary
16
retinal pigment epithelial cell
16
skeletal muscle myoblast
16
skeletal muscle tissue
16
upper lobe of left lung
15
CD4-positive, alpha-beta T cell
15
GM12878
15
ascending aorta
15
cerebellum
15
frontal cortex
15
mammary gland epithelial cell
15
neutrophil
15
small intestine
14
endocrine pancreas
14
mesenchymal stem cell
14
pancreatic acinar cell
14
pancreatic beta cell
14
prostate gland
14
putamen
13
Peyer's patch
13
bronchial epithelial cell
13
excitatory neuron
13
fibroblast of cardiac tissue
13
heart right ventricle
13
pancreatic alpha cell
13
skeletal muscle satellite cell
13
temporal lobe
12
Ammon's horn
12
aorta
12
fibroblast of dermis
12
lung
12
lymphoblastoid cell line
12
mammary epithelial cell
12
naive thymus-derived CD4-positive, alpha-beta T cell
12
neuroblastoma cell
11
brain
11
breast epithelium
11
epithelial cell of prostate
11
erythroblast
11
glomerular visceral epithelial cell
11
pancreatic delta cell
11
testis
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
hepatic stellate cell
10
kidney tubule cell
10
lymphocyte
10
progenitor cell of endocrine pancreas
10
thoracic aorta
9
SK-N-DZ
9
SK-N-SH
9
cardiac muscle cell
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
induced pluripotent stem cell
9
liposarcoma
9
parathyroid adenoma
9
thymus
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CMK
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
amygdala
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
kidney glomerular epithelial cell
7
mature neutrophil
7
memory B cell
7
neuronal stem cell
7
renal cortical epithelial cell
7
right lobe of liver
7
stomach smooth muscle
7
uterus
6
Brodmann (1909) area 46
6
Chondroid Chordoma
6
H9
6
HAP-1
6
HUES8
6
Jurkat
6
KARPAS-422 cell
6
LNCAP
6
LoVo cell
6
MM.1S
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
anterior cingulate cortex
6
chondrocyte
6
fibroblast of breast
Organ
8
lymph node
Life stage
4
adult
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
month_released!
March, 2023
relevant_life_stage!
embryonic
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR677EVG
released
Annotation file set
: Candidate regulatory elements for BSS01274 MM.1S from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR127KNA
released
Annotation file set
: Target gene predictions for BSS01274 MM.1S from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR966TYL
released
Annotation file set
: Chromatin states for BSS01274 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002PIZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE MM.1S
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR427VFP
released
Annotation file set
: Histone modifications annotation for Blood MMPERIOD1S from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR861GVO
released
Annotation file set
: Binding sites annotation for Blood MMPERIOD1S from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR064TPU
released
Annotation file set
: enhancer-gene predicton of MM.1S-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR718HIX
released
Annotation file set
: Accessible chromatin annotation for Blood MM.1S from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP